Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0092 ATGGGTCTTCTTCCTTCTCTAGTTTTTCTTGTGATTTTAACGGCAGCAGCAGTCCTTTTGATGATGATCCCTTTTTCTCTTTCTCTCACTCTAGACGGTCTGACATTGTTAGAAATCAAGAGTAGTTTAAATGACAGTAAGAATGTTCTCAGTGACTGGAAATACACTGATGAATCTCCTTGCAAATGGACTGGAATCTCTTGCCATCCCCTAGACCAAAGAGTTAGCTCTATTAATTTACCATATATGCAGCTTGGCGGAGTTATATCTCCAAGCATTGGTAAACTGAGTAGATTACAGAGACTGGCACTTCACCAGAATGGTTTGCATGGATCTATTCCTAATGAACTGGCAAATTGCATTGAGCTTAGAGCCTTGTACTTGAGGGCTAATTATCTTCAAGGTGGAATCCCATCTGCTATTGGAAACCTTTCTTATCTTACCATTCTCGATTTATCGAGCAATTCGTTGAAGGGTGCTATACCTTCATCCATTGGCAGCCTTACCAAATTGCGTTCTCTGAACTTGTCAGCCAATTTTTTCTCTGGGGAAATCCCAGACGTTGGCATTCTAAGCACTTTCAGAAACAACTCGTTCATGGGCAATTTGGATCTTTGTGGCCGGCAAGTAAACAAGCCTTGCCGTACCTCAATGGGATTCCCTGCCATTCTGCCTCATGCCGAAAGTGAACAATCTTTAGCCCCTGCTAAACGCTCCTCACACTATGTCAAAGGCTTTTTTATCGGAGCTATGTCGACCATGGGATTTGCTCTTTTCATTCTTCTCACAATCCTTTCCATGCGTTTACTTTCGAAAAAGGAAAGAGCAGCCAAGAAATACACTGAAGTGAAGAAGCAAGTTGCTCAAGAATCCAGCACAAAGCTTATTACTTTTCATGGTGATCTTCCATACCCATCAAGTGAAATTATTGAAAAGTTGGAGGCGTTGGATGAGGAGGATGTTGTTGGTTCGGGTGGGTTTGGTACGGTTTATCGGATGGTCATGAATGATTGTGGAACTTTTGCGGTTAAAAGGATTGATAGGAGTAAGGAAGGTTCGGATCAAGTTTTCGAAAGGGAGTTGGAGATTTTGGGAAGCATCAAACATATTAATTTAGTGTACCTTAGAGGCTATTGCAAGCTTCCCACTTCAAAGCTTCTTATTTACAACTTTCTTGCAATGGGCAGCTTGGATGATTTGTTGCACGAACGTGGATTGGAGATGCAAGCATTGACTTGGGGTGCACGCTTAAGGATTGCTCTTGGTTCGGCTCGAGGATTGGCCTATTTGCATCATGATTGCTGTCCTAAGATTATTCATCGAGATATAAAATCAAGCAACATTCTTCTTGACGAAACTTTGGAGCCCAGAGTATCGGATTTCGGTCTAGCCAAGCTTCTTGTTGACGAGGATTCCCACGTCACAACTGTTGTCGCCGGCACTTTTGGTTATTTGGCACCAGAATACCTGCAAAGTGGGAGAGCAACTGAGAAGTCCGATGTTTATAGCTTTGGAGTTCTCTTACTTGAGTTAGTAACTGGGAAGAGACCGACTGATCCGGCTTTTGTGGACAGAGGCTTGAATGTAGTTGGTTGGATGAACACATTATTGAGAGAAAAGCAATTATTGGTAGAAGTAGTAGACAAGAGATGTAGAGATGTTGATCCCGAAAGCGTAGAAGCGATTCTCGAAATAGCAGGAAGGTGCACCGATGCAAACCCGGACTATCGACCGATGATGAATGAAGTGTTGCAGATGATAGAGCAAGAGGTGATGTCACCTTGCCCGAGTGAGTTTTACGAGTCTTATTCGGATCATTCTTGA 1824 42.82 MGLLPSLVFLVILTAAAVLLMMIPFSLSLTLDGLTLLEIKSSLNDSKNVLSDWKYTDESPCKWTGISCHPLDQRVSSINLPYMQLGGVISPSIGKLSRLQRLALHQNGLHGSIPNELANCIELRALYLRANYLQGGIPSAIGNLSYLTILDLSSNSLKGAIPSSIGSLTKLRSLNLSANFFSGEIPDVGILSTFRNNSFMGNLDLCGRQVNKPCRTSMGFPAILPHAESEQSLAPAKRSSHYVKGFFIGAMSTMGFALFILLTILSMRLLSKKERAAKKYTEVKKQVAQESSTKLITFHGDLPYPSSEIIEKLEALDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSKEGSDQVFERELEILGSIKHINLVYLRGYCKLPTSKLLIYNFLAMGSLDDLLHERGLEMQALTWGARLRIALGSARGLAYLHHDCCPKIIHRDIKSSNILLDETLEPRVSDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPAFVDRGLNVVGWMNTLLREKQLLVEVVDKRCRDVDPESVEAILEIAGRCTDANPDYRPMMNEVLQMIEQEVMSPCPSEFYESYSDHS 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 526011 529381 - Conep19aG0009800.1 Cone19ag0092 458529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0092 607 ProSiteProfiles Protein kinase domain profile. 316 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0092 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0092 607 Pfam Protein kinase domain 319 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0092 607 SMART serkin_6 316 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0092 607 Gene3D Ribonuclease Inhibitor 31 216 IPR032675 -
Cone19ag0092 607 SUPERFAMILY Protein kinase-like (PK-like) 297 587 IPR011009 -
Cone19ag0092 607 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Cone19ag0092 607 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 185 590 IPR050647 -
Cone19ag0092 607 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Cone19ag0092 607 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524(InterPro)
Cone19ag0092 607 Coils Coil 270 290 - -
Cone19ag0092 607 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 392 599 - -
Cone19ag0092 607 Gene3D Transferase(Phosphotransferase) domain 1 392 596 - -
Cone19ag0092 607 Gene3D Phosphorylase Kinase; domain 1 274 391 - -
Cone19ag0092 607 Pfam Leucine rich repeat 122 179 IPR001611 GO:0005515(InterPro)
Cone19ag0092 607 SUPERFAMILY L domain-like 32 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0092 Cone-Chr19:526011 Cone9ag0880 Cone-Chr9:4293527 5.75E-157 dispersed
Cone13ag0090 Cone-Chr13:558200 Cone19ag0092 Cone-Chr19:526011 5.53E-64 transposed
Cone13ag0089 Cone-Chr13:556162 Cone19ag0092 Cone-Chr19:526011 5.23E-234 wgd
Cone19ag0092 Cone-Chr19:526011 Cone2ag0559 Cone-Chr2:3175328 1.49E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82362 PF09811 Yae1_N 8.70E-11 CL0255 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0092 - - - 0.0