Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0099 ATGGAGGTAGCTTCGTTGTGCATGGGCGGCGGTACCAAGGACTACAGTGAATGTTCATCGGAGAAGAAGAAAGAGCTGGATGACGAGGAGAAAGCGGCGACGGCGCCGGAGGCTTTGCTCCGTGTTCGGCTCTGTGAAGCTCCGATCCTTTTGCTTGTTAGATTCCACAAAGCTCTCCGATCGGAGCTCGCTGACCTCCGCCGCTTGACCTTGTCGGCGTCTGAGAGCGGTTGCTATGGCGGCCGTGAATTCTTCTCCGAGCTGCTCCAGCGGTTCGAATTTCTTAATCTTGCTTACAAGTACCATTGCGCGTCGGAGGATGAGATTGTGTTCCCAGCACTGGATTTGCACACAAAAAATGTGGTGTTCACATATTCACTAGAGCATGACAGCATAAACGAGCTATTCGACTCGATTTTTAATCGGCTGAATGTATTGATAGAGGAAGAGGGTAATCAGAACATCTCCAAGCCATTTCAACAACTTGTTTTTTGCTTGGGCACTATCCAGACCTCCATGTGCCAGCATGTGCTCAAAGAAGAAGAACAGGTTTTCCCATTGTTGATCCGACATTGCTCTGCCGAAGAACAAGCTTCACTTGTGTGGCAATTCCTCTCTAGTCTTCCTGTGAGACTGCTTGAAGATTTTCTGCCGTGGATGATGTCTTTTATTTCTCCCCAGGAACAAGAAGAAGTTACTAATTGTATTAGAGACATATTGCCCAATGACAAGATACTTCAAGAGGTGGTAATGTCTTGGCTTGCTTCTACGAAAAGGCCTTCCTATGGAACAAAGACAGGGAAATGGTTATTACCCATTTTGGGTTCCTCTGATAAAAGTTCTGGAAACAATTGGAATTCTATTCAAACGAACTCCTTCCAAAAGGTTAGACAAAACCCAGTTGACAGTCTTCATATCTGGAACTCTGCAATTATGAAAGATCTCAGAGAAATTCAACAAGAGCTTTTTCCACTGAGAAGTAATACTGGCACCTTCTCAAATCTGGATTCATTAGTCTTAAAGATCAAATTTCTTGTTGACTGCATTGTCTTGTACAGCAATGCATGGGAGAAATTCTTTTACCCTGTGCTAAGTCAAATTTCCGGTGTTCCTTCCTTCAACCAACATTATAGGTTTACAAAGATTGTAGGTTTACAAAGATTGCTTGACTATAATGCACAAGATGATCATAACGTACCTTTTGGAAAGTTCATTGAGAAGCTTTGCTGGGAACTAGACTCTTTCATGGTGGATGTAAGCACTCAGTTTTCTATCCAAGAAACACAGGTTTTTCCTGCCATCAGAGAAAACTGCACCTCAAAAATGCTGCAACAGATTATATACATGAGCCTCCATATGCTTCCACTCGGGTTGCTAAAATGTGTCATAACTTGGTTTTCCTCTCACTTATCCGAGGAAGAAGTGAAGCCAATCCTTAACAGAACTGAACAGGAAGATTCTGTAGTTAATGAATCTTTTTCATTACTCTTACGTGAATGGTTGCGTGTAGGTTATTCAGGCAAGATCTCTGTTGAAAATTTCGGAAGTGATTTGCAAAAAATGTTCAAGAACAGAACTCATTTCTTTCATGAACAAATCAAAGAATCTGCTTCTGGGTCATCATCTTTATACTCTGTCCAGCCCAGTAAAGGAAAAAACCAAAGAATGATGACATGTTATTCATATTCCTTTCCTAAATTCCACAAGGGAAAAAACCATGCTGTTTCTGCTCATCATAAGGACCCAAAACCCATAGATCTAATCTTCTACTTCCATAAAGCTCTCAAGAAAGATTTGGAATACTTTGTTTTAGTTTCTGCTCAGCTGTCTGAAAATCCTGGCCTTTTCAACAGTTTTCTTCAGAGATTCCAACTTGTTAGGCTTTTATACCAAGTCCACACTGATGCAGAGGACCAAATCGCCTTTCCTGCATTAGAGGCAAAGGGAAAATTCGAAAACATTAGTCAGGCCTATACCATGGATCATACACTGGAGGTGGACCAGTTCATGGAAGTCTCTCTTGTTCTAGATGAGATATCTGAATATATTGATCAGACAAAGCAAGCAAAGCAAGACCTTCAAAATCTTTGTCTAAGTCTCCAGGACAAGTGCAAATCACTACACAACTTACTATCTGACCATGTTGACCGTGAAGAAATAGAGCTCTGGCCTTTATACAGAGAATGCTTCTCTATAAAGGAGCAGGAAAAGATCACAGGGTCTATACTTGGAAGAACGAGAGCAGAAATATTGAAGGATATGATACCTTGGCTTATGGCATCTTTAACACCAGAAGAACAACACAATATGATGTCTTTGTGGGGCCAAGCTACAAGGAATACTATGTTTAATGAATGGTTAGGAGAATGGTTGGAAGGTTATGATACGGGTAAGGTCGATAAAAAGATGACTGACATATCCTCTTCTTTCACAGTAGACCCCTTAGAAATCATCTCAACATATTTATCTAAGGATGCTGCCTTTAATGAAAGCAAAGGCATGAAGGAGTGCTTTGATCATTCTTACAAGGTTGAGCAGAAGAAGGATTCTCTTGAATATGAAAATGATGATACATTGTCTGAATATGTGAAATTGATTTCAAAGGGTGATAATGATAAGAGAAAGAAAGCAGAAACTGATTCTATGGACCTCCTTATCATTGATCAGGAAAGAAATCTTCAAGGAAATTTGAAGGTAAGGTATAATGAAAACCTTCTTGCAATGAGTCAAGAAGAACTTGAGGCTGCAATAAGAAGAGTTTCTAGGGATTCATCCTTAGACACGAAAATGAAATCATACGTCTTACAGAACTTGATGATGAGCCGTTGGATTGCAACTCAATCTAGTACAAAAGTAAATGTTGCAAGCAATGGAGAAGGATTTTCGGGGCAGAGTCCATCCTACAGAGACTCTCTTATGAAAGCATTTGGGTGCAAACATTATAAAAGAAACTGTAAGCTTCTAAGTCCTTGTTGCAATCTGCTGTACACATGCATACGCTGTCATGATGAGGTTGCAAATCATTCAGTTGATAGAAGATCAATTACAACTATGATGTGCATGAATTGTTTATTACTTCAGCCGATTTCAAACACATGCTCTACTCCCTCCTGTGCTAATTTGACCATGGCAAGATACTTATGCCGGATATGCAAATTGTTTGATGATGAAAGGGAGATCTATCATTGTCCTTACTGTAACCTGTGTCGGGTAGGGAAGGGACTTGGAATCGACTATTTTCACTGCATGAATTGCAATGCTTGTATGGCTCGTTCTCTTTCGGTTCATACATGTAGAGAAAAGTGCTTGGAGGAAAACTGTCCAATCTGCCATGAATACATCTTCACCTCCTCTTCTCCTGTCAAGGCCCTTGTCTGTGGTCATTTGATGCACTCAACTTGTTTTCAGGACTACACCAATGTTCATTATACTTGCCCGATTTGTAGCAAGTCACTAGGTGATATGCAGGTCTACTTTAGAATGTTGGATGCATTATTAGCTGAAGAGAAAATGCCGGATGAATATTCCGGCAAATCCCAGGGTATATTATGTAATGATTGTGAGAAGAGAGGAAGCGCGCCGTTTCATTGGCTTTACCACAAATGCCCTCATTGTGGCTCATATAATACTAGGCTTCTATGA 3642 40.64 MEVASLCMGGGTKDYSECSSEKKKELDDEEKAATAPEALLRVRLCEAPILLLVRFHKALRSELADLRRLTLSASESGCYGGREFFSELLQRFEFLNLAYKYHCASEDEIVFPALDLHTKNVVFTYSLEHDSINELFDSIFNRLNVLIEEEGNQNISKPFQQLVFCLGTIQTSMCQHVLKEEEQVFPLLIRHCSAEEQASLVWQFLSSLPVRLLEDFLPWMMSFISPQEQEEVTNCIRDILPNDKILQEVVMSWLASTKRPSYGTKTGKWLLPILGSSDKSSGNNWNSIQTNSFQKVRQNPVDSLHIWNSAIMKDLREIQQELFPLRSNTGTFSNLDSLVLKIKFLVDCIVLYSNAWEKFFYPVLSQISGVPSFNQHYRFTKIVGLQRLLDYNAQDDHNVPFGKFIEKLCWELDSFMVDVSTQFSIQETQVFPAIRENCTSKMLQQIIYMSLHMLPLGLLKCVITWFSSHLSEEEVKPILNRTEQEDSVVNESFSLLLREWLRVGYSGKISVENFGSDLQKMFKNRTHFFHEQIKESASGSSSLYSVQPSKGKNQRMMTCYSYSFPKFHKGKNHAVSAHHKDPKPIDLIFYFHKALKKDLEYFVLVSAQLSENPGLFNSFLQRFQLVRLLYQVHTDAEDQIAFPALEAKGKFENISQAYTMDHTLEVDQFMEVSLVLDEISEYIDQTKQAKQDLQNLCLSLQDKCKSLHNLLSDHVDREEIELWPLYRECFSIKEQEKITGSILGRTRAEILKDMIPWLMASLTPEEQHNMMSLWGQATRNTMFNEWLGEWLEGYDTGKVDKKMTDISSSFTVDPLEIISTYLSKDAAFNESKGMKECFDHSYKVEQKKDSLEYENDDTLSEYVKLISKGDNDKRKKAETDSMDLLIIDQERNLQGNLKVRYNENLLAMSQEELEAAIRRVSRDSSLDTKMKSYVLQNLMMSRWIATQSSTKVNVASNGEGFSGQSPSYRDSLMKAFGCKHYKRNCKLLSPCCNLLYTCIRCHDEVANHSVDRRSITTMMCMNCLLLQPISNTCSTPSCANLTMARYLCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMARSLSVHTCREKCLEENCPICHEYIFTSSSPVKALVCGHLMHSTCFQDYTNVHYTCPICSKSLGDMQVYFRMLDALLAEEKMPDEYSGKSQGILCNDCEKRGSAPFHWLYHKCPHCGSYNTRLL 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 559631 565975 - Conep19aG0010500.1 Cone19ag0099 458536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0099 1213 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 619 1212 - -
Cone19ag0099 1213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1100 1151 IPR013083 -
Cone19ag0099 1213 SUPERFAMILY CHY zinc finger-like 972 1034 IPR037274 GO:0008270(InterPro)
Cone19ag0099 1213 ProSiteProfiles Zinc finger CHY-type profile. 971 1040 IPR008913 GO:0008270(InterPro)
Cone19ag0099 1213 Gene3D nmb1532 protein domain like 51 207 - -
Cone19ag0099 1213 Gene3D nmb1532 protein domain like 579 746 - -
Cone19ag0099 1213 Pfam Ring finger domain 1106 1148 IPR001841 -
Cone19ag0099 1213 CDD Hr-like 51 186 - -
Cone19ag0099 1213 Gene3D - 1178 1213 - -
Cone19ag0099 1213 CDD RING-H2_Pirh2-like 1106 1149 - -
Cone19ag0099 1213 SMART ring_2 1107 1148 IPR001841 -
Cone19ag0099 1213 FunFam Zinc finger protein-related isoform 1 1102 1151 - -
Cone19ag0099 1213 Pfam Hemerythrin HHE cation binding domain 50 188 IPR012312 -
Cone19ag0099 1213 ProSiteProfiles Zinc finger CTCHY-type profile. 1043 1106 IPR017921 -
Cone19ag0099 1213 ProSiteProfiles Zinc finger RING-type profile. 1107 1149 IPR001841 -
Cone19ag0099 1213 SUPERFAMILY Zinc hairpin stack 1044 1099 IPR037275 -
Cone19ag0099 1213 Coils Coil 676 703 - -
Cone19ag0099 1213 Pfam CHY zinc finger 978 1046 IPR008913 GO:0008270(InterPro)
Cone19ag0099 1213 CDD Hr-like 586 724 - -
Cone19ag0099 1213 Pfam Zinc-ribbon 1154 1211 IPR039512 -
Cone19ag0099 1213 SUPERFAMILY RING/U-box 1106 1157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0099 K16276 - - csv:101212459 1374.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0306 Cone-Chr13:2395636 Cone19ag0099 Cone-Chr19:559631 3.74E-258 dispersed
Cone19ag0099 Cone-Chr19:559631 Cone19ag0343 Cone-Chr19:2797263 3.38E-258 dispersed
Cone13ag0096 Cone-Chr13:585403 Cone19ag0099 Cone-Chr19:559631 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34