Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0102 | ATGGATCCTCCACTCGTAAATGAATCGTCCTTCTCTGCTGCGAATCCATCTGCGTACGGCTTAGCTGAAATTTGGCCCTTCGGAGGGGAATCAATCGGAGCTGCTGCTGCATTGGGGCTCCGGATGAGTAATTTCGGTCAAAATCACGGTGGATTTGGTGAGACCTCAGCGAATCGCGACGGTTCGTTGGAGGAATCGACAGTGACGGAGCAAGGTGGCGATGGCGGCGGTGGTGGTGGAAGGAAGAGGAAGGATGTCAGCTCTGAGGATGAGTCTTCCAAACTAGTTTCGAGTCTTTCGACTAGTAGAGCCAATTACTTGGATGAATCGAATGGTAAACGGGTGAAATTAGGAGAATCGGGAGATGAGAAGAGTGAGTTGAGAGCTGAAGTGGAAGCTAGTTCTGGTAATAAGGCAGCTGATCAAAGCACCAAAAAAGCTTCCGAGCCACCTAAAGATTGCATTCACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGTCACAGTCTAGCAGAAAGAGCTAGGAGAGAGAAGATTAGTGAGAAGATGAAAATCCTCCAAGATTTGATCCCCGGATGTAATAAGGTTATTGGAAAAGCACTTGTCCTCGATGAGATAATCAATTATATCCAATCGCTGCAACATCAGGTTGAGTTCCTCTCAATGAAGCTTGAAACAGTTAATTCGAGGATGAACATCAGCCCCTGCGTTGAAGCATACACTCCAAAGGATAAAGAGAAAAAAAATGAGTAA | 753 | 46.35 | MDPPLVNESSFSAANPSAYGLAEIWPFGGESIGAAAALGLRMSNFGQNHGGFGETSANRDGSLEESTVTEQGGDGGGGGGRKRKDVSSEDESSKLVSSLSTSRANYLDESNGKRVKLGESGDEKSELRAEVEASSGNKAADQSTKKASEPPKDCIHVRARRGQATDSHSLAERARREKISEKMKILQDLIPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLETVNSRMNISPCVEAYTPKDKEKKNE | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 583082 | 585672 | + | Conep19aG0010800.1 | Cone19ag0102 | 458539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 43 | 175 | - | - | |
Cone19ag0102 | 250 | Coils | Coil | 210 | 230 | - | - | |
Cone19ag0102 | 250 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 163 | 213 | IPR011598 | GO:0046983(InterPro) | |
Cone19ag0102 | 250 | CDD | bHLH_AtBPE_like | 153 | 235 | - | - | |
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 77 | 91 | - | - | |
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 92 | 108 | - | - | |
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 145 | 175 | - | - | |
Cone19ag0102 | 250 | Gene3D | - | 160 | 234 | IPR036638 | GO:0046983(InterPro) | |
Cone19ag0102 | 250 | SMART | finulus | 169 | 219 | IPR011598 | GO:0046983(InterPro) | |
Cone19ag0102 | 250 | FunFam | Basic helix-loop-helix transcription factor | 160 | 232 | - | - | |
Cone19ag0102 | 250 | MobiDBLite | consensus disorder prediction | 48 | 69 | - | - | |
Cone19ag0102 | 250 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 161 | 233 | IPR036638 | GO:0046983(InterPro) | |
Cone19ag0102 | 250 | Pfam | Helix-loop-helix DNA-binding domain | 167 | 214 | IPR011598 | GO:0046983(InterPro) | |
Cone19ag0102 | 250 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 66 | 233 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0102 | Cone-Chr19:583082 | Cone20ag0732 | Cone-Chr20:5014150 | 1.03E-37 | dispersed | |
Cone13ag0099 | Cone-Chr13:612715 | Cone19ag0102 | Cone-Chr19:583082 | 8.40E-129 | wgd | |
Cone13ag0995 | Cone-Chr13:8388473 | Cone19ag0102 | Cone-Chr19:583082 | 6.19E-61 | wgd | |
Cone19ag0102 | Cone-Chr19:583082 | Cone19ag0986 | Cone-Chr19:7438204 | 8.41E-61 | wgd | |
Cone19ag0102 | Cone-Chr19:583082 | Cone2ag0572 | Cone-Chr2:3296185 | 2.35E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45267 | PF00179 | UQ_con | 2.70E-39 | CL0208 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0102 | - | - | - | 0.0 |