Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0102 ATGGATCCTCCACTCGTAAATGAATCGTCCTTCTCTGCTGCGAATCCATCTGCGTACGGCTTAGCTGAAATTTGGCCCTTCGGAGGGGAATCAATCGGAGCTGCTGCTGCATTGGGGCTCCGGATGAGTAATTTCGGTCAAAATCACGGTGGATTTGGTGAGACCTCAGCGAATCGCGACGGTTCGTTGGAGGAATCGACAGTGACGGAGCAAGGTGGCGATGGCGGCGGTGGTGGTGGAAGGAAGAGGAAGGATGTCAGCTCTGAGGATGAGTCTTCCAAACTAGTTTCGAGTCTTTCGACTAGTAGAGCCAATTACTTGGATGAATCGAATGGTAAACGGGTGAAATTAGGAGAATCGGGAGATGAGAAGAGTGAGTTGAGAGCTGAAGTGGAAGCTAGTTCTGGTAATAAGGCAGCTGATCAAAGCACCAAAAAAGCTTCCGAGCCACCTAAAGATTGCATTCACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGTCACAGTCTAGCAGAAAGAGCTAGGAGAGAGAAGATTAGTGAGAAGATGAAAATCCTCCAAGATTTGATCCCCGGATGTAATAAGGTTATTGGAAAAGCACTTGTCCTCGATGAGATAATCAATTATATCCAATCGCTGCAACATCAGGTTGAGTTCCTCTCAATGAAGCTTGAAACAGTTAATTCGAGGATGAACATCAGCCCCTGCGTTGAAGCATACACTCCAAAGGATAAAGAGAAAAAAAATGAGTAA 753 46.35 MDPPLVNESSFSAANPSAYGLAEIWPFGGESIGAAAALGLRMSNFGQNHGGFGETSANRDGSLEESTVTEQGGDGGGGGGRKRKDVSSEDESSKLVSSLSTSRANYLDESNGKRVKLGESGDEKSELRAEVEASSGNKAADQSTKKASEPPKDCIHVRARRGQATDSHSLAERARREKISEKMKILQDLIPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLETVNSRMNISPCVEAYTPKDKEKKNE 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 583082 585672 + Conep19aG0010800.1 Cone19ag0102 458539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0102 250 MobiDBLite consensus disorder prediction 109 131 - -
Cone19ag0102 250 MobiDBLite consensus disorder prediction 43 175 - -
Cone19ag0102 250 Coils Coil 210 230 - -
Cone19ag0102 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983(InterPro)
Cone19ag0102 250 CDD bHLH_AtBPE_like 153 235 - -
Cone19ag0102 250 MobiDBLite consensus disorder prediction 77 91 - -
Cone19ag0102 250 MobiDBLite consensus disorder prediction 92 108 - -
Cone19ag0102 250 MobiDBLite consensus disorder prediction 145 175 - -
Cone19ag0102 250 Gene3D - 160 234 IPR036638 GO:0046983(InterPro)
Cone19ag0102 250 SMART finulus 169 219 IPR011598 GO:0046983(InterPro)
Cone19ag0102 250 FunFam Basic helix-loop-helix transcription factor 160 232 - -
Cone19ag0102 250 MobiDBLite consensus disorder prediction 48 69 - -
Cone19ag0102 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 233 IPR036638 GO:0046983(InterPro)
Cone19ag0102 250 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983(InterPro)
Cone19ag0102 250 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0102 Cone-Chr19:583082 Cone20ag0732 Cone-Chr20:5014150 1.03E-37 dispersed
Cone13ag0099 Cone-Chr13:612715 Cone19ag0102 Cone-Chr19:583082 8.40E-129 wgd
Cone13ag0995 Cone-Chr13:8388473 Cone19ag0102 Cone-Chr19:583082 6.19E-61 wgd
Cone19ag0102 Cone-Chr19:583082 Cone19ag0986 Cone-Chr19:7438204 8.41E-61 wgd
Cone19ag0102 Cone-Chr19:583082 Cone2ag0572 Cone-Chr2:3296185 2.35E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45267 PF00179 UQ_con 2.70E-39 CL0208 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0102 - - - 0.0