Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0110 ATGGTTTCTTCAACTTCTCAGAAGAAATCTCTTCACCCTCTCTTAGCCATCAACCTCGCTAAGCTTACCATCCCTTCTTCTTCTTCTTCACCTCCTAACACTCAACACGACTTCGATTTCTCCGACGTCTTTGGCCCCACTGCCAACTCATCTTCATCCCCGTCCACTTCATTCGCAGGGGACCCACAACAACCTCAAGTGATCCACCACCGGTCCCACTCCCTCGTGGGACCCTCCCCTCGCTTCTCCACTCCCTCCTCTTCCCTCCCCTTCCACCAACCCCATAACCACCTCGATTCCCAATCTGAAGACGAAGAAGAAGAAGGCGAGGAAGATGAATCCGAAACCCTAATTCAAGTTCCAGAATCAAATGAGGAGCTGCAAGTGAACGAGAGTGAAATTCGTGAAGGGAAGAGAGAAACGGTGGGCAAGATCGGGCCTGGAGATTTTGAAATTCTTCGAGTTGTGGGGAAGGGCGCGTTTGGGAAGGTCTTTTTGGTGAGGAGGAAAGGAGAGACAAGTAGTAATAATAATGATGGTGATGGGATTTATGCAATGAAGGTGATGAGGAAGGACACTATCATAAAGAAGAATCATGTGGATTATATGAGAGCTGAGAGAGAGATTCTCTCTAAAGTTGTTAATTCCTTTATTGTCCAGCTCCGCTACTCTTTCCAGACAAAAACCAAGCTTTATTTGATTCTTGATTTCATAAATGGAGGACATCTCTTCTTTCATCTCTACCGGCAAGGGATCTTTAGTGAGGATCAAGCAAGGTTCTATACTGCTGAGATTGTGACTGCTGTTTCGCATCTGCATAAGGCCGGGATCGTCCATAGGGATCTCAAGCCAGAGAATATTCTCATGGATTCTGATGGGCATGTTATGCTAACAGATTTCGGGCTGGCTAAGGAAATTGATGAATCGAGCAGGTCGAATTCGATTTGCGGGACAACAGAATACATGGCTCCAGAAATCTTGCAATCAAAAGGTCACAACAAAGATGCTGATTGGTGGAGTGTTGGGGTTCTCCTGTATGAGATGCTAAGTGGTCAGCCTCCATTTACACATGCTAATAGGAAGAAGCTCCAGGAAAGAATCATCAAAGAGAAAGTAAAACTTCCACCATTCCTCAGCACTGAAGCTCACTCTTTACTCAGAGGATTGCTACAAAAAGAACCCTCTAAAAGATTAGGAAGTGGGCCCACCGGAGGGGACGAGTTAAAAAATCACAAATGGTTCCGACCCATAAATTGGAAGAAATTGGAGGCAAGAGAAGTGCTTCCAAAGTTTAAACCGGACGTGTTCGGAAAAGATTGCACGGCCAATTTCGACCGGTGCTGGACCGCAATGCCGGCAGATGATTCTCCGGCTCCAACCCCAACTGATCAAGGTGAACACTTTCACGGCTATACCTACATTGCCCCAAACCCCTGGCTCTCTTCATCATCTGGATGA 1458 46.43 MVSSTSQKKSLHPLLAINLAKLTIPSSSSSPPNTQHDFDFSDVFGPTANSSSSPSTSFAGDPQQPQVIHHRSHSLVGPSPRFSTPSSSLPFHQPHNHLDSQSEDEEEEGEEDESETLIQVPESNEELQVNESEIREGKRETVGKIGPGDFEILRVVGKGAFGKVFLVRRKGETSSNNNDGDGIYAMKVMRKDTIIKKNHVDYMRAEREILSKVVNSFIVQLRYSFQTKTKLYLILDFINGGHLFFHLYRQGIFSEDQARFYTAEIVTAVSHLHKAGIVHRDLKPENILMDSDGHVMLTDFGLAKEIDESSRSNSICGTTEYMAPEILQSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPFLSTEAHSLLRGLLQKEPSKRLGSGPTGGDELKNHKWFRPINWKKLEAREVLPKFKPDVFGKDCTANFDRCWTAMPADDSPAPTPTDQGEHFHGYTYIAPNPWLSSSSG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 615318 618717 + Conep19aG0011600.1 Cone19ag0110 458547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0110 485 SMART serkin_6 150 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 ProSiteProfiles Protein kinase domain profile. 150 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 FunFam Non-specific serine/threonine protein kinase 238 433 - -
Cone19ag0110 485 SUPERFAMILY Protein kinase-like (PK-like) 148 477 IPR011009 -
Cone19ag0110 485 PANTHER RIBOSOMAL PROTEIN S6 KINASE 103 477 - -
Cone19ag0110 485 Gene3D Phosphorylase Kinase; domain 1 149 457 - -
Cone19ag0110 485 CDD STKc_AGC 156 414 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cone19ag0110 485 MobiDBLite consensus disorder prediction 44 70 - -
Cone19ag0110 485 Pfam Protein kinase C terminal domain 437 473 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 SMART pkinase_C_6 415 475 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Cone19ag0110 485 Pfam Protein kinase domain 150 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0110 485 MobiDBLite consensus disorder prediction 24 140 - -
Cone19ag0110 485 MobiDBLite consensus disorder prediction 77 96 - -
Cone19ag0110 485 ProSitePatterns Protein kinases ATP-binding region signature. 156 187 IPR017441 GO:0005524(InterPro)
Cone19ag0110 485 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1456 Cone-Chr13:10407120 Cone19ag0110 Cone-Chr19:615318 5.99E-08 dispersed
Cone19ag0110 Cone-Chr19:615318 Cone19ag1459 Cone-Chr19:9471323 7.33E-167 dispersed
Cone19ag0110 Cone-Chr19:615318 Cone2ag0168 Cone-Chr2:895285 6.85E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82364 PF00046 Homeodomain 3.50E-17 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0110 K04688 - csv:101214867 683.33