Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0116 | ATGGCGACGGTCGGCGAGATTTTCAGGCGGAGTGTGTCGGAGCAAGTTGGTCGGAGTTCAGCTGAGCTTCATGTTCTTGCTGTTGATGATAGCCACGTAGATCGGAAGGTCATTGAGAGATTGCTTAAGGTCTCTTCCTGCAGAGTTACGGCTGTTGAGAGTGGAACAAGAGCTCTGCAGTATCTAGGTTTGGATGGAGAGAAGACCTCTGCTGGGTTTAATGATTTGAAGGTGAATCTAATAATGACAGACTATTCTATGCCTGGAATGACTGGATATGAACTCCTCAAGAAGATCAAGGAATCATCTGCTTTCCGGGAGATTCCGGTCGTTGTGATGTCATCCGAGAATATTCTCACCCGAATAGATAGATGTTTGGAGGAAGGAGCAGAGGAGTTCATAGTAAAGCCCGTAAAACTCTCCGACGTAACACGGCTACGAGATTGCATCATGCGTGAAAATACCGAGAAAAGTACCAGCACTTGTATTAGTAGTAGTACTAGTTCAAAGAGGAAGAAGGAGGAGGAGAAGACGATCAAAGAAGAGGAGGATACTATGGTAAAATCACCTTCACTTCCGTCATCACCATCGACAATTTCGCAATCATCCCCGAAAACACCATCTCCATTGATATCAGCATTACAACTAACACCATCTCCTACTATATCTCCATCAAAGAAACCTAGATTGCATAATGGAGACAAAAATTCCGTAATCAAGTCCGATAATGCGATATAG | 738 | 44.04 | MATVGEIFRRSVSEQVGRSSAELHVLAVDDSHVDRKVIERLLKVSSCRVTAVESGTRALQYLGLDGEKTSAGFNDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDRCLEEGAEEFIVKPVKLSDVTRLRDCIMRENTEKSTSTCISSSTSSKRKKEEEKTIKEEEDTMVKSPSLPSSPSTISQSSPKTPSPLISALQLTPSPTISPSKKPRLHNGDKNSVIKSDNAI | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 655317 | 656517 | - | Conep19aG0012200.1 | Cone19ag0116 | 458553 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0116 | 245 | CDD | REC_typeA_ARR | 25 | 146 | - | - | |
| Cone19ag0116 | 245 | MobiDBLite | consensus disorder prediction | 168 | 187 | - | - | |
| Cone19ag0116 | 245 | MobiDBLite | consensus disorder prediction | 157 | 245 | - | - | |
| Cone19ag0116 | 245 | Pfam | Response regulator receiver domain | 25 | 143 | IPR001789 | GO:0000160(InterPro) | |
| Cone19ag0116 | 245 | ProSiteProfiles | Response regulatory domain profile. | 24 | 151 | IPR001789 | GO:0000160(InterPro) | |
| Cone19ag0116 | 245 | SUPERFAMILY | CheY-like | 23 | 146 | IPR011006 | - | |
| Cone19ag0116 | 245 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 20 | 203 | IPR045279 | GO:0009736(InterPro) | |
| Cone19ag0116 | 245 | SMART | REC_2 | 23 | 150 | IPR001789 | GO:0000160(InterPro) | |
| Cone19ag0116 | 245 | MobiDBLite | consensus disorder prediction | 188 | 226 | - | - | |
| Cone19ag0116 | 245 | Gene3D | - | 23 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0116 | Cone-Chr19:655317 | Cone8ag0639 | Cone-Chr8:6286505 | 7.41E-66 | dispersed | |
| Cone12ag0621 | Cone-Chr12:5585406 | Cone19ag0116 | Cone-Chr19:655317 | 1.56E-64 | wgd | |
| Cone13ag0113 | Cone-Chr13:685989 | Cone19ag0116 | Cone-Chr19:655317 | 1.84E-109 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45269 | PF13041 | PPR_2 | 8.50E-08 | CL0020 | Cone | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0116 | K14492 | - | mdm:114821044 | 250.366 |