Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0118 ATGGAGGTTATGCTCATGACTTCGCCTTCAGCTTTGCAGGATGATTCATCTTCCAGAGATCTCACTTACAGCAGAAAGCAGAAGTCTCTCGGTCTGCTTTGCTCCAATTTTTTGAGCCTGTACGACCGTGATGGTGTCAATATGATTGGCCTTGACGATGCTGCCTCAAAATTAGGTGTTGAGAGGCGGCGGATCTACGATATTGTTAATGTCCTTGAAAGTATCGGGGTTCTTGCAAGGAAGGCAAAGAATCAGTACTGTTGGAGAGGATTTGCAGCAATACCAGCAGCTTTACAGGAGCTCAAAGATGATGGATTGAGGGAGAATTATTGCGCCTTTACTAGCAACGATTGTTCAAAAGTACCAAATTATGAGGATGATGATGAAAGTTCTTCCAATCCCACAGTTGGAAGTCAGAATTCCAATTCCCAATCTTCAGCACCATCTAAAACTGATAACAAACGGGAAAAGTCTCTGGCTCTTCTAACACAGAATTTCGTCAAGCTCTTTGTCTGCTCTAATATGGACATGATATCTCTTGATGATGCTGCAAAGTTACTACTAGGCAGTGCCCGAAATGCAGCATTAATGAGAACAAAAGTAAGACGGCTTTATGATATTGCAAATGTGCTGTCCTCTATGGGTCTAATCGAAAAGACTCAATCAGCAGATACAAGAAAGCCCGTGTTTAGGTGGGTTGGATTAAACGGTAAACCTAAGATTGAATCAACAAACAATTCAGTTTCAGTTCCTCAAGAGTCCAGGAAAAGGACATTTGGAGCAGATGTCACAAACATCAGTATAAAGAGGAACAAAGTGGAAAAGAAAACGAAGCTCAATATTCAGACTCAAATCAAGGTGGAGAATACAGAAGATGAAGTTGAAAGAATCAATATAGAGGACTATAGACAGGGTTTAAACAGCTACCAGTTTGGACCCTTTGCTCGAGTCACTGTAGCTAAAGTAGATGTACCTGAAAACAACAATGGCATGGTAGCTCGTGATTGGGAGAACCTTGCCTCAACTTACTGCCCTCAGTATCAGAGCCGAGCATTAAGAGAGCTCTTCTCCCACTACATGGAAGCATGGAAATCATGGTATTCAGAAGTTGTGAAGAAGCCTATTTCAATTTCATAA 1137 41.6 MEVMLMTSPSALQDDSSSRDLTYSRKQKSLGLLCSNFLSLYDRDGVNMIGLDDAASKLGVERRRIYDIVNVLESIGVLARKAKNQYCWRGFAAIPAALQELKDDGLRENYCAFTSNDCSKVPNYEDDDESSSNPTVGSQNSNSQSSAPSKTDNKREKSLALLTQNFVKLFVCSNMDMISLDDAAKLLLGSARNAALMRTKVRRLYDIANVLSSMGLIEKTQSADTRKPVFRWVGLNGKPKIESTNNSVSVPQESRKRTFGADVTNISIKRNKVEKKTKLNIQTQIKVENTEDEVERINIEDYRQGLNSYQFGPFARVTVAKVDVPENNNGMVARDWENLASTYCPQYQSRALRELFSHYMEAWKSWYSEVVKKPISIS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 663153 665566 + Conep19aG0012400.1 Cone19ag0118 458555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0118 378 PANTHER TRANSCRIPTION FACTOR E2F 16 349 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone19ag0118 378 FunFam E2F transcription factor-like E2FE 149 236 - -
Cone19ag0118 378 SUPERFAMILY Winged helix DNA-binding domain 24 88 IPR036390 -
Cone19ag0118 378 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 SMART E2F_TDP_2 25 90 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 FunFam E2F transcription factor 8 20 92 - -
Cone19ag0118 378 MobiDBLite consensus disorder prediction 122 154 - -
Cone19ag0118 378 MobiDBLite consensus disorder prediction 128 149 - -
Cone19ag0118 378 Coils Coil 280 300 - -
Cone19ag0118 378 Gene3D - 20 92 IPR036388 -
Cone19ag0118 378 Gene3D - 148 236 IPR036388 -
Cone19ag0118 378 Pfam E2F/DP family winged-helix DNA-binding domain 26 90 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0118 Cone-Chr19:663153 Cone5ag1327 Cone-Chr5:7825728 1.84E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone19ag0118 Cone-Chr19:663153 8.36E-242 wgd
Cone16ag0130 Cone-Chr16:738356 Cone19ag0118 Cone-Chr19:663153 2.24E-134 wgd
Cone19ag0118 Cone-Chr19:663153 Cone2ag0880 Cone-Chr2:34706175 3.18E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45270 PF04780 DUF629 1.90E-168 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0118 K09391 - csv:101219210 449.129