Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0118 ATGGAGGTTATGCTCATGACTTCGCCTTCAGCTTTGCAGGATGATTCATCTTCCAGAGATCTCACTTACAGCAGAAAGCAGAAGTCTCTCGGTCTGCTTTGCTCCAATTTTTTGAGCCTGTACGACCGTGATGGTGTCAATATGATTGGCCTTGACGATGCTGCCTCAAAATTAGGTGTTGAGAGGCGGCGGATCTACGATATTGTTAATGTCCTTGAAAGTATCGGGGTTCTTGCAAGGAAGGCAAAGAATCAGTACTGTTGGAGAGGATTTGCAGCAATACCAGCAGCTTTACAGGAGCTCAAAGATGATGGATTGAGGGAGAATTATTGCGCCTTTACTAGCAACGATTGTTCAAAAGTACCAAATTATGAGGATGATGATGAAAGTTCTTCCAATCCCACAGTTGGAAGTCAGAATTCCAATTCCCAATCTTCAGCACCATCTAAAACTGATAACAAACGGGAAAAGTCTCTGGCTCTTCTAACACAGAATTTCGTCAAGCTCTTTGTCTGCTCTAATATGGACATGATATCTCTTGATGATGCTGCAAAGTTACTACTAGGCAGTGCCCGAAATGCAGCATTAATGAGAACAAAAGTAAGACGGCTTTATGATATTGCAAATGTGCTGTCCTCTATGGGTCTAATCGAAAAGACTCAATCAGCAGATACAAGAAAGCCCGTGTTTAGGTGGGTTGGATTAAACGGTAAACCTAAGATTGAATCAACAAACAATTCAGTTTCAGTTCCTCAAGAGTCCAGGAAAAGGACATTTGGAGCAGATGTCACAAACATCAGTATAAAGAGGAACAAAGTGGAAAAGAAAACGAAGCTCAATATTCAGACTCAAATCAAGGTGGAGAATACAGAAGATGAAGTTGAAAGAATCAATATAGAGGACTATAGACAGGGTTTAAACAGCTACCAGTTTGGACCCTTTGCTCGAGTCACTGTAGCTAAAGTAGATGTACCTGAAAACAACAATGGCATGGTAGCTCGTGATTGGGAGAACCTTGCCTCAACTTACTGCCCTCAGTATCAGAGCCGAGCATTAAGAGAGCTCTTCTCCCACTACATGGAAGCATGGAAATCATGGTATTCAGAAGTTGTGAAGAAGCCTATTTCAATTTCATAA 1137 41.6 MEVMLMTSPSALQDDSSSRDLTYSRKQKSLGLLCSNFLSLYDRDGVNMIGLDDAASKLGVERRRIYDIVNVLESIGVLARKAKNQYCWRGFAAIPAALQELKDDGLRENYCAFTSNDCSKVPNYEDDDESSSNPTVGSQNSNSQSSAPSKTDNKREKSLALLTQNFVKLFVCSNMDMISLDDAAKLLLGSARNAALMRTKVRRLYDIANVLSSMGLIEKTQSADTRKPVFRWVGLNGKPKIESTNNSVSVPQESRKRTFGADVTNISIKRNKVEKKTKLNIQTQIKVENTEDEVERINIEDYRQGLNSYQFGPFARVTVAKVDVPENNNGMVARDWENLASTYCPQYQSRALRELFSHYMEAWKSWYSEVVKKPISIS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 663153 665566 + Conep19aG0012400.1 Cone19ag0118 458555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0118 378 PANTHER TRANSCRIPTION FACTOR E2F 16 349 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone19ag0118 378 FunFam E2F transcription factor-like E2FE 149 236 - -
Cone19ag0118 378 SUPERFAMILY Winged helix DNA-binding domain 24 88 IPR036390 -
Cone19ag0118 378 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 SMART E2F_TDP_2 25 90 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 FunFam E2F transcription factor 8 20 92 - -
Cone19ag0118 378 MobiDBLite consensus disorder prediction 122 154 - -
Cone19ag0118 378 MobiDBLite consensus disorder prediction 128 149 - -
Cone19ag0118 378 Coils Coil 280 300 - -
Cone19ag0118 378 Gene3D - 20 92 IPR036388 -
Cone19ag0118 378 Gene3D - 148 236 IPR036388 -
Cone19ag0118 378 Pfam E2F/DP family winged-helix DNA-binding domain 26 90 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone19ag0118 378 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0118 K09391 - - csv:101219210 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0118 Cone-Chr19:663153 Cone5ag1327 Cone-Chr5:7825728 1.84E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone19ag0118 Cone-Chr19:663153 8.36E-242 wgd
Cone16ag0130 Cone-Chr16:738356 Cone19ag0118 Cone-Chr19:663153 2.24E-134 wgd
Cone19ag0118 Cone-Chr19:663153 Cone2ag0880 Cone-Chr2:34706175 3.18E-139 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45270 PF04780 DUF629 1.90E-168 No_clan Cone TF