Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0122 ATGGGTAGCATAGGGAACCAGAGGTGGAGCAATCATCGCAGTAATCATAATACGAATTTCTCCAACTACCATGATCGCAACTCTTCTTTCGACTTGTATGATAATCATCATGATGATGACGATGATAGCTACAATCATCACACACATCGTCAGCGAGAATCGAGGAATCCTCCAAAGGAGTACATCTGCTCGATCTCCGGCTCGTTAATGGCGGATCCTGTCATCGTTCCTCCCGGCCAAACGTTTGAGCGAATTTCCGTCGAGATGTGCAAAGACCTAGGCTTCTCCCCTACGCTCGATGACGGTTTCAAGCTCGATTTCTCCAACGTGATTTCGAATCTCGCTTTGAGACGCGCCATACTTAACTGGTGCGATCGTACTGGCACTCCTCACCCTCGCACGCCGAATTACTCCACCGTCGAGAGCATCGTCCGTGAGTTGAGGGCGGAGGATAGACTGAAGCATCAAAAACAGAGCTCCGCCTCCACCACCGCAGGCAGTTCAGAGAGCGAGCTCTTGAGAGGCGTTGCTGATAAACCGACGGTAACACTAAACCATGCCGAGACCGAAATCCATGCACGAGTCAATATGTTCGACTCGATCTCCTCCGACAACAACGGCGAACTGCCAGCCATCGGCCGGAAGAGTACAGAAACGCCTCTACCTTTCACCACTCGACCTTCCTGCTACTCTTCTTCTTCGTCTTCGACTGAATTTCCCGCATTTGAAACCCTAAGAAAATCGGTGGATTCATTTTCGATCGCATCAGAAGATCAGGAACAGTTAATAATATCGAAGCTGAACAGTCCTGAAGTGTACGATCAGGAAGAAGCTGTAATTTCTCTGAGAAGAATCACTAGATCCAGCAAGGAAGCTAGGTTTTCACTCTGCACACCTCGGCTCCTCTCCGCCCTCCGATCACTGATCTTGTCGAGATACTCAAAAGTCCAAGTAAACGCCGTAGCTTCGCTGGTCAACCTGTCGCTGGAGAAGCGGAACAAGGTGCAGATCGTACGGTCGGAATTACTCACCCCCTTGATCGACATTTTAAGGGCCGGATTCAGGGAAGCACAGGAACACGCTGCAGGGGCGCTCTTCAGTTTAGCGTTAGAGGACGATAACAAAATGGCGATCGGAGCTTTAAACTCTCTACCACCTCTTTTGCACGCTATCCGATCCGAAAACGAGCGGACTCAGCACGACTCGGGACTCTGTTTATACCATCTGAGTCTGACTCAGATCAACCGAGTCAAACTCGTTAAACTCGGCGCTGTTCCGATTATCCTATCAATGGCTAAAGTGAAGAAGTCGGCGAGCTGGGCATTACTGATTCTATGCAATCTCGCGATTTGCACGGAGGGGAGGTCGGCGTTACTGGACGGAAATGGTGTGGGATTTTTGGTAGAGATGTTGAGGGAGAACGAGTCGGGGTCCGAGTCGACTGAAGACAACTGTGTTTCTGCGCTGCATTCACTGAGTCAGGGCGGATTGAGGTTCAAAGGGTTGGCGAGGGAGGCAAGGGCGGTGGAAGTGTTGAGGGGGGTTGAAGAGAGAGGGAGTGAGAGAGCGAGAGATAAGGCAAAGAGGATTTTGCAGATAATGAAAGGAAGCGAGTATGGGGAGAAGGAAAATGGTGGTGGTGAAATAGACTCGGTGGCGGAATCGAGTGGACTCAGTTGGACTCGGCCTCGACCCGGTGGCAGAGGAAGAAATTTTCACTCTCCGAACTCCAATTACACCACCAATTTTTAA 1752 50.34 MGSIGNQRWSNHRSNHNTNFSNYHDRNSSFDLYDNHHDDDDDSYNHHTHRQRESRNPPKEYICSISGSLMADPVIVPPGQTFERISVEMCKDLGFSPTLDDGFKLDFSNVISNLALRRAILNWCDRTGTPHPRTPNYSTVESIVRELRAEDRLKHQKQSSASTTAGSSESELLRGVADKPTVTLNHAETEIHARVNMFDSISSDNNGELPAIGRKSTETPLPFTTRPSCYSSSSSSTEFPAFETLRKSVDSFSIASEDQEQLIISKLNSPEVYDQEEAVISLRRITRSSKEARFSLCTPRLLSALRSLILSRYSKVQVNAVASLVNLSLEKRNKVQIVRSELLTPLIDILRAGFREAQEHAAGALFSLALEDDNKMAIGALNSLPPLLHAIRSENERTQHDSGLCLYHLSLTQINRVKLVKLGAVPIILSMAKVKKSASWALLILCNLAICTEGRSALLDGNGVGFLVEMLRENESGSESTEDNCVSALHSLSQGGLRFKGLAREARAVEVLRGVEERGSERARDKAKRILQIMKGSEYGEKENGGGEIDSVAESSGLSWTRPRPGGRGRNFHSPNSNYTTNF 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 685798 687787 + Conep19aG0012800.1 Cone19ag0122 458559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0122 583 MobiDBLite consensus disorder prediction 539 583 - -
Cone19ag0122 583 SUPERFAMILY RING/U-box 51 132 - -
Cone19ag0122 583 MobiDBLite consensus disorder prediction 1 61 - -
Cone19ag0122 583 PANTHER U BOX DOMAIN-CONTAINING 45 537 - -
Cone19ag0122 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 133 IPR013083 -
Cone19ag0122 583 MobiDBLite consensus disorder prediction 29 57 - -
Cone19ag0122 583 SUPERFAMILY ARM repeat 262 531 IPR016024 -
Cone19ag0122 583 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0122 583 Gene3D - 258 534 IPR011989 -
Cone19ag0122 583 MobiDBLite consensus disorder prediction 151 175 - -
Cone19ag0122 583 SMART Ubox_2 60 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0122 583 Pfam U-box domain 58 125 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0122 583 MobiDBLite consensus disorder prediction 1 28 - -
Cone19ag0122 583 SMART arm_5 371 411 IPR000225 GO:0005515(InterPro)
Cone19ag0122 583 SMART arm_5 289 329 IPR000225 GO:0005515(InterPro)
Cone19ag0122 583 SMART arm_5 330 370 IPR000225 GO:0005515(InterPro)
Cone19ag0122 583 SMART arm_5 412 447 IPR000225 GO:0005515(InterPro)
Cone19ag0122 583 SMART arm_5 451 494 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0900 Cone-Chr16:9344124 Cone19ag0122 Cone-Chr19:685798 6.63E-85 dispersed
Cone13ag0120 Cone-Chr13:709968 Cone19ag0122 Cone-Chr19:685798 6.01E-265 wgd
Cone16ag0127 Cone-Chr16:718916 Cone19ag0122 Cone-Chr19:685798 2.61E-111 wgd
Cone19ag0122 Cone-Chr19:685798 Cone2ag0881 Cone-Chr2:34729517 2.28E-120 wgd
Cone19ag0122 Cone-Chr19:685798 Cone2ag0153 Cone-Chr2:794797 1.07E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0122 - - - 0.0