Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0128 ATGTTTGCAGGGACAACCCAGAAATGCAAGACTTGTGAAAAGACTGTTTACTTAGTTGATCAGCACACTGCTGATCGAAAAGTCTATCACAAAGCTTGCTTTAGATGCCACCATTGCAAGGGTACCCTCAAGTTGAGTAACTATTCCTCATTTGAAGGTGTGTTATATTGCAAGCCTCACTTTGACCAATTGCTTAAGATGACAGGCAGCTTGCAAAAGAGTTTTGAAGGTGCTCCGAGGACCGTTAAAACCGACCGATCCACCAATCAGGTCCAAAACAATAGCAAAGTAAGAAGTTTGTTTGCCGGAACTAAGGAGAAATGTGTTGCTTGCGAGAAAACAGTGTACCCAATTGAAAAGGTGGGAGTAGATGGGAAGTCATACCATAAATCATGCTTCAAGTGCACATATGGGGGATGTATTATAAGTCCATCAAACTACATAGCACATCAGCATCGTCTCTACTGTAAGCACCATCACACTCAACTTTTCAAGGAGAAGGGTAACTTCAGCCAATTTGGTAATAACCAGCTTCATCTGCAACAATCTAAGATTAATGTCATGTAA 567 41.27 MFAGTTQKCKTCEKTVYLVDQHTADRKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLLKMTGSLQKSFEGAPRTVKTDRSTNQVQNNSKVRSLFAGTKEKCVACEKTVYPIEKVGVDGKSYHKSCFKCTYGGCIISPSNYIAHQHRLYCKHHHTQLFKEKGNFSQFGNNQLHLQQSKINVM 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 698533 699452 + Conep19aG0013400.1 Cone19ag0128 458565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0128 188 FunFam LIM domain and actin-binding 1 102 172 - -
Cone19ag0128 188 FunFam LIM domain and actin-binding 1 3 73 - -
Cone19ag0128 188 SMART lim_4 107 159 IPR001781 -
Cone19ag0128 188 SMART lim_4 8 60 IPR001781 -
Cone19ag0128 188 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Cone19ag0128 188 ProSiteProfiles LIM domain profile. 7 67 IPR001781 -
Cone19ag0128 188 Gene3D Cysteine Rich Protein 3 73 - -
Cone19ag0128 188 Gene3D Cysteine Rich Protein 102 172 - -
Cone19ag0128 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Cone19ag0128 188 CDD LIM2_SF3 108 168 - -
Cone19ag0128 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 35 75 - -
Cone19ag0128 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 34 - -
Cone19ag0128 188 CDD LIM1_SF3 5 66 - -
Cone19ag0128 188 Pfam LIM domain 9 63 IPR001781 -
Cone19ag0128 188 Pfam LIM domain 108 164 IPR001781 -
Cone19ag0128 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Cone19ag0128 188 ProSitePatterns LIM zinc-binding domain signature. 9 43 IPR001781 -
Cone19ag0128 188 PANTHER OS06G0237300 PROTEIN 2 177 - GO:0005886(PANTHER)|GO:0015629(PANTHER)|GO:0051015(PANTHER)|GO:0051017(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0128 K09377 - - csv:101212133 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0889 Cone-Chr17:7030054 Cone19ag0128 Cone-Chr19:698533 3.11E-93 dispersed
Cone19ag0128 Cone-Chr19:698533 Cone1ag1236 Cone-Chr1:56045798 1.33E-73 dispersed
Cone19ag0128 Cone-Chr19:698533 Cone20ag0235 Cone-Chr20:1021075 5.83E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g698 Blo04g00744 . . . Bpe12g00582 . . . . . Cma10g00145 . Car10g00136 Car11g00110 Sed08g0155 . Cpe04g01541 Bhi02g00404 Tan09g2210 Cmetu02g0989 . Hepe09g0177 . . Cla06g01642 Cam06g1826 Cec06g1874 Cco06g1881 Clacu06g1785 Cmu06g1726 Cre06g2545 . . . Cone19ag0128 . . . . Blo13g00045 . . Bda14g00823 . . Bma03g00797 Bma08g00180 . Cmo10g00152 . . . . . . Cpe18g00829 . . . . . . . . . . . . . . Lsi06g01528 Csa01g00174 Chy02g02557 Cme02g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45271 PF01812 5-FTHF_cyc-lig 1.80E-29 CL0246 Cone TF