Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0131 ATGCATGGGCTTGGAGGTGAGGAGAGGAAGAGGAGTCGGCACATGTGGAAAGTCTCTCATCGTGGTACCTCGATCGTAGTAGCTGATGATTCTTCGTCTTCGCCTAATTCATTTCTCAAGGAAGGACGCAAGATTGTTGTTGGTGATTGTGCTCTTTTCAAACCGCCCCAGGATTCTCCACCTTTCATTGGCATAATTCGGTGGTTGACTACTTGTAAAGAGAATAAGTTAAAGTTAGGTGTAAATTGGCTCTATCGCGCATCTGAAGTAAAACTTGGCAAGGGCATCCATTTGGAAGCTGCCCCAAACGAAGTTTTCTATTCCTTTCACAAGGATGAGATTCCTGCTGCATCTTTACTCCATCCATGTAAAGTTGCATTCCTTCCTAAAGGCGTTGCACTTCCATCCGGGATCTCTTCATTTGTGTGCCGGCAGGTCTATGACATTACAAACAAGTGCTTATGGTGGTTAACCGATCAGGATTATATTGATGAACGGCAGCAAGAAGTAGATCAACTCTTAAATAAGACACGAATCGAAATGCATGCGACAATGCAACCTGGTGGACGTTCACCTAAGCCAGTGAGTGTTCCAACTTCGACATCACAGTTAAAAGCTAGTTCGGATAGTGTACAGAACAGTGCGTCAGTGTTTCCTTCTTCTCAAGTTAAAGGAAAGAAAAGAGAAAGGGGTGAACAGGGCTTTGAACCTATGAAAAGGGAGCGTAGTGCAAAAGCAGATGATGGGGATTCTGCTAACTGCAGATTGGAAAGCAATATGAAGTCTGAAATTGCCAAAATTACAGAGAAAGGAGGTCTTGTAGATTCTGAAGGAGTCGAGATATTGGTGCAGTTATTGTTGACTGATAGAAGTGAGAAAAAAATTGATTTGGCTGGTAGATCAATGCTTGCCGGTGTAGTAGCAGCTACAGATAAGCTTGAATGCCTCAATCAGTTTGTTCGTCTAAAAGGTTTGCCTGTATTCGATGAATGGCTTCAAGAGGTTCACAAGGGAAAAATTGGTGATTTTTGCAGTCCCAAGGAAAGTGATAAATTGATTGAGGAGTTTCTCTTAATTTTGCTTAGAGCACTTGATAAGCTTCCAGTAAATCTTCCGGAGCTACAGATGTGTAACATTGGAAAGTCTGTAAATCACTTGCGTACCCATAAGAACTTAGAAATCCAGAAGAAAGCCAGGAGTTTAGTAGACACATGGAAGAAACGTGTTGAGGCTGAAATGAACATAAATGACGCAAAGTCTGGTTCGAGTCAGACTGTTGCTTGGTCTGGAAAAGCACGCCTTTCTGAAGTTTCTCCAAGTGGGAGAAATCAAGGCCTTTCCTCTGATGTTGCTATCAAGAGTTCTTTTACACAGCTTTGTACATCCAAAACTACTTCCGTTAAGCTTGTCCAGGACGAGGGTGCTACCAGATCAGCATCAGTTTCTCCTGGCTCTATAAAATCGGTGGCATCACCTGCCTCAACAAGTACTAATTCAAAAGACGGGCCATTGAGAACTCATTCTGTTGGTGCTCCCACTGATCTTCCTCAAACAACAGCTAGGGACGAGAAGAGTAGCAGCTCTAGTCAGTCTCACAACAATGGTCAATGTTTCAGTGAGCATGGAAAAAGCGGGGGGAAAGAGGATGCAAGAAGCTCTACAGCCGCTTCAATGTGTGTGATTAAGATCTCACGTCATGGAAAGTCAGTTAATGAATCAACTGGCTCAGCTGTCGGGTCGGGCAGAGGTTCAAATCACAAAAACACAGCTTCTGGAACGACAAATGAGAAGGCCCTTGATGGACCTGTTGTTGAGGGAAATAGTCACAAGTTGATTGTTAAGATCAGTAATCGAGGTCGTAATAATCCTGCACAAATTTCCAGTGGAGGATCACCTGAAGACCCTACAGTAATGGGTAGCAGGGCTTCTTCCCCTGTGCTTTCGGATAAGCAGGATCACTGTGATCGTAGCTCAAAAGAAAAGAATGATTCTCTTCGAGCTAATATTAATTCAGATATGGATACTGAGTCCAAGGACTTAGTGACTGGATCTGATAATGGTGAGGGATCCCCTGCTGCAGTTAATGGTGAAGGATGCTGTAAGACAGGCGAGGAGCCCCTAGTATCAAAAGCTGCTTCCTTGCCCGTGGGAAATGAACATAAAAGCATGGTCTTACAGGAAACTGCTTTCAAATCTGGAAATGTGTTAACTGAGAGTTCTGTCAAGCACTCCAGAGCTAGTACAACTACTTCAGGTATAAACAATGTTGGGACGAATCTACCGGTTAGTGTGGTTACTGAAGATCTGTCCAAGTCTGATTTGATTTCATCAATTGATTCTCTACATAAAAACAGCACCGTGGTAAATGAGTCTCCTAAAGAAGAGCTTGCTAGAGACGAAAAAGAGTCTAGTGATGGTGTTGATATAAAATGTCAGGGTATAGTTACTGGTAGTATTGGGGCTAAGAGTTGGGACCCTAAGCCAACTACTTCAAAATCTGAGGATAATCCCGATGGGGAGCAAAATGGACATTCCAACACTTCTGGTGCAAAAGTTAATGAAAATGTAGTAGACGCGGTAGCCATAGATAATAATGGAAACAAATCACACAAGGAGACAAAAAAGACAGACGATGAAGTGAATGGAGATTACAATTCAGATTCTAAACCAAGATCGTGCAGCTCTTCTGCAGATGAAGGTAAAGGTCGTAGTCCTGGGTCAACTCCAGACGTTGAGAGTGAAGCCATTGTGGGAAAACCCAGGACAAATCCATCACTAGAAGTTAATGGAGGAAAGAACAATAGCTCTACAAACGAGTTGTTGAATGATATTGCTCTTACAGAGCAAATTTCATCTTACATGATGCCTTCTGATTCAGCTAAAGGAACTACTGATGAAGCGTTGCAGACTTCTCATTCTATGAAAGATCCGGCTTCAGAAAATGCTAGCAAAATGATAACTGAAGAGGATGACAAAACGGAGGCAGAAACTGATGTTAATCAAATAGAGAAACAACAATCTGAGTGTGATGTTTTTCTGGCTTCTGAGACTAAAGGTTTAGTTGGTTTGGCTACAGCTACTACTAATCATGATGGTGAGAATAAGGAGGAGGTTTTGGAAATGAAGGCGGTTAATGAGAAAAATGATGAACGGGGAGATAAGAAGAGACCACTCACGTCCTCCAACTTAACTGGTATCGATGCAGAGGAATCTTCATCTTCTGCAGCAGATACTTCTTCCGTGTCTGCTGTAGGGGTGGCAGTAGATAAGGTGGGTTCTAAGGTGGAATTTGATTTGAATGAAGGTCTTAATGTGGATGGGAAGAAATGTGGGGAGGAGCCAAATAACTGGACAACACCTGTCAAGTTAATGAGCCCATTACCCTACCCTGTCTCTTCTGTCTCTAGCAGCCTCTCTGCTCCAGTTACTGTGGCTGCTGCTGCAAAAGGGCCCTTTGTTCCACCTGATGACCTTTTGAGGAGCAAAGGTGAACTTGGTTGGAAAGGTTCCGCTCCAACAAGTGCTTTTCGACCTGCTGAACCAAGAAAGGCTTTAGAGTTGCTATTGGCTGCAACAAGTAGTAGTCCAATCCCTGATTCTACCACTGGAAAAAGCATTAGCCGTCTTCCCTTGGATATTGACTTGAATATACCTGATGAGAGAGTCTTGGAAGATATGAATCCACGAGAGTCTTGTCCCGGAACAAGTTCTTGGTCTGAACCGAAAAGCAGTCTTGATTTGACATGTGGCATTGGCCCTACTGTGCCTCCTGTTCGTGGTTTTGGAGGACTTGATCTTGACTTAAACCGTAGTGACGAAGCTCCTGAGGCGACCAATCTTTTGGCTAAAAGCATTCGTAGGGTAGGCATTCCAGTTGGGAACAAATTATCTAGTCTTCAACTTAATGGAGATGCAGCCTTTTGCAGGGGCTTTGATTTGAATGGGCCTATGGCAGACGAGCCAAGCGTTGAACCGTCATCATTTAGTCAGAATTCAAGGCGAGCTGCGGGTCCTGCTCAACCACCTGTTTCTGGTCTTTGGATGAACAATGCAGAAATGGGGAGCTTCTCATCATGGTTTTCTCCAGGCAACACGTACCCAGCTGTTGCAATTCCATCAATCATGCCTGATAGAGCAACAGTGGAGCAGCCTTTTCCGATCATTGCAGCTAGTGGTCCACCCACAAGGATGTTGGGCCCGACTAATGGTAGCAGCAGCAGCGGCCCATTTAGCCCGGATGTTTGCCGCGGGTCGGTGTTATCTTCTTCTCCTGCATTGCCCTTTGCTTCCAGTTCTTTCCAGTACTCCGATCTCCCGTTTGGAAACAGCTTTCCTATGCAGTCAACGACCAGTTTTTCAGGCAGTCTAATGACGTATACGGATTCACCATCTGGCAGTAGGCTTTACTTTCCTGCAGTCCACTCACAGTTTCTAGGACCTTCCGGTGCAGTCTCTACTCATTATCCAAGACCATATGTTACCAGTCTCTCTGATGCTAGCAACAACAATAATACTGGTGCCGAACTCAATAAAAAGTGGGGAAGGCAGGGGCTTGACCTAAACGCAGGCCCTGGAGCTGGTCCAGACATGGAAGGGAGAGATGAGAGTTCACCCCTTGCACTTAGGCAACTTTCTGTTTCCGGTTCAAACGGCTTACCTTTGAAGAGGAAGGAGCCAGAGGGTGGCTGGGATGCCTACAAATAA 4704 44.45 MHGLGGEERKRSRHMWKVSHRGTSIVVADDSSSSPNSFLKEGRKIVVGDCALFKPPQDSPPFIGIIRWLTTCKENKLKLGVNWLYRASEVKLGKGIHLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKGVALPSGISSFVCRQVYDITNKCLWWLTDQDYIDERQQEVDQLLNKTRIEMHATMQPGGRSPKPVSVPTSTSQLKASSDSVQNSASVFPSSQVKGKKRERGEQGFEPMKRERSAKADDGDSANCRLESNMKSEIAKITEKGGLVDSEGVEILVQLLLTDRSEKKIDLAGRSMLAGVVAATDKLECLNQFVRLKGLPVFDEWLQEVHKGKIGDFCSPKESDKLIEEFLLILLRALDKLPVNLPELQMCNIGKSVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSSQTVAWSGKARLSEVSPSGRNQGLSSDVAIKSSFTQLCTSKTTSVKLVQDEGATRSASVSPGSIKSVASPASTSTNSKDGPLRTHSVGAPTDLPQTTARDEKSSSSSQSHNNGQCFSEHGKSGGKEDARSSTAASMCVIKISRHGKSVNESTGSAVGSGRGSNHKNTASGTTNEKALDGPVVEGNSHKLIVKISNRGRNNPAQISSGGSPEDPTVMGSRASSPVLSDKQDHCDRSSKEKNDSLRANINSDMDTESKDLVTGSDNGEGSPAAVNGEGCCKTGEEPLVSKAASLPVGNEHKSMVLQETAFKSGNVLTESSVKHSRASTTTSGINNVGTNLPVSVVTEDLSKSDLISSIDSLHKNSTVVNESPKEELARDEKESSDGVDIKCQGIVTGSIGAKSWDPKPTTSKSEDNPDGEQNGHSNTSGAKVNENVVDAVAIDNNGNKSHKETKKTDDEVNGDYNSDSKPRSCSSSADEGKGRSPGSTPDVESEAIVGKPRTNPSLEVNGGKNNSSTNELLNDIALTEQISSYMMPSDSAKGTTDEALQTSHSMKDPASENASKMITEEDDKTEAETDVNQIEKQQSECDVFLASETKGLVGLATATTNHDGENKEEVLEMKAVNEKNDERGDKKRPLTSSNLTGIDAEESSSSAADTSSVSAVGVAVDKVGSKVEFDLNEGLNVDGKKCGEEPNNWTTPVKLMSPLPYPVSSVSSSLSAPVTVAAAAKGPFVPPDDLLRSKGELGWKGSAPTSAFRPAEPRKALELLLAATSSSPIPDSTTGKSISRLPLDIDLNIPDERVLEDMNPRESCPGTSSWSEPKSSLDLTCGIGPTVPPVRGFGGLDLDLNRSDEAPEATNLLAKSIRRVGIPVGNKLSSLQLNGDAAFCRGFDLNGPMADEPSVEPSSFSQNSRRAAGPAQPPVSGLWMNNAEMGSFSSWFSPGNTYPAVAIPSIMPDRATVEQPFPIIAASGPPTRMLGPTNGSSSSGPFSPDVCRGSVLSSSPALPFASSSFQYSDLPFGNSFPMQSTTSFSGSLMTYTDSPSGSRLYFPAVHSQFLGPSGAVSTHYPRPYVTSLSDASNNNNTGAELNKKWGRQGLDLNAGPGAGPDMEGRDESSPLALRQLSVSGSNGLPLKRKEPEGGWDAYK 1567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 713065 719764 + Conep19aG0013700.1 Cone19ag0131 458568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1230 1244 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 567 596 - -
Cone19ag0131 1567 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 283 413 IPR035441 -
Cone19ag0131 1567 ProSiteProfiles TFIIS N-terminal domain profile. 326 412 IPR017923 -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 511 540 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1318 1341 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1323 1337 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1043 1083 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1494 1567 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 955 980 - -
Cone19ag0131 1567 Gene3D - 28 269 IPR043151 -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1043 1057 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 926 940 - -
Cone19ag0131 1567 Pfam BAH domain 44 152 IPR001025 GO:0003682(InterPro)
Cone19ag0131 1567 ProSiteProfiles BAH domain profile. 43 158 IPR001025 GO:0003682(InterPro)
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 955 999 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 648 667 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1225 1244 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 473 504 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 668 684 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1391 1410 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 567 692 - -
Cone19ag0131 1567 SMART BAH_4 43 158 IPR001025 GO:0003682(InterPro)
Cone19ag0131 1567 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 314 423 IPR035441 -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 786 940 - -
Cone19ag0131 1567 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1566 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1494 1510 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 614 647 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 982 999 - -
Cone19ag0131 1567 Coils Coil 985 1005 - -
Cone19ag0131 1567 CDD TFIIS_I 362 410 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 886 902 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 1058 1081 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 183 254 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 193 221 - -
Cone19ag0131 1567 SMART TFS2_5 332 411 IPR003617 GO:0005634(InterPro)
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 223 254 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 473 551 - -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 865 885 - -
Cone19ag0131 1567 Pfam TFIIS helical bundle-like domain 360 409 IPR017923 -
Cone19ag0131 1567 MobiDBLite consensus disorder prediction 788 807 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0131 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1352 Cone-Chr18:9312177 Cone19ag0131 Cone-Chr19:713065 8.25E-272 dispersed
Cone19ag0131 Cone-Chr19:713065 Cone8ag0305 Cone-Chr8:1759160 7.70E-19 dispersed
Cone11ag0129 Cone-Chr11:576310 Cone19ag0131 Cone-Chr19:713065 1.83E-276 wgd
Cone13ag0127 Cone-Chr13:738957 Cone19ag0131 Cone-Chr19:713065 0 wgd
Cone18ag1351 Cone-Chr18:9305791 Cone19ag0131 Cone-Chr19:713065 2.32E-294 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45272 PF08389 Xpo1 1.30E-18 CL0020 Cone TR