Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0136 ATGGCTGTTCATGGCGTTGATTTCAAGTGGTACGATGGATTCTTCTTGTCCATGCTCGCAACGAGTGCAATAATTGTTGCGATCAACTGGAAGAGATACTATACTTGCACTCATCCATTGCACATATGGATTGTGGTTGATTACATGACTGTGTTTGTTTTCCGCCTGTTGATGTTCCTTGATAATGGACTTGCTGCTGGAATGGGATTGGATTTCGGATGGCAGCAGAGGTATGCTCGGTTTTGTGGAAGAATTGTCGTTCTCTCAATTCTCTCTGTGTTCCTCTATCCATTTCTTTGGGGTTGGACCATAGTTGGTACCCTGTGGTTTAGGGAGGCTAAGAACTGTTTGCCTGAAGGTCAGAAATGGGGTTTCCTTATTTGGTTGCTTTTTAGCTACTGTGCACTCATTTGCATTGCTTGCATGTCATTGGGCAAGTGGTTGTCACGTAGACAGGCACACTTACTACGTGCACAACAAGGCATTCCTTTATCAGAATATGGGGTTTTGGTTGACATGATCCGGGTACCTGATTGGGCATTTGAAGCTGCTGGCCAAGAAGCAAGAGGCATGGGCCTAGAAGCTGCTGCATACCATCCTGGGCTTTACTTGACACCAGCTCAGAGGGAAGCTGTTGAAGCACTGATTCAGGAACTTCCGAAGTTCAGGTTGAAGGCTGTTCCAACAGATTGTAGTGAATGTCCCATTTGCCTAGAAGAGTTTCATGTAGGGAATGAGGTCCGTGGCCTTCCTTGCGCTCATAATTTCCATGTAGAATGTATCGATGAATGGCTTCGACTGAACGTAAAATGTCCCCGTTGCCGTTGCTCGGTTTTTCCAAACCTTGACCTCAGTGCTCTATCCAATCTCCGTTCTGATACAGAACGGTCATCTGCTCCTGTTGTCACAACAGCCAACCCATATGTCAGACCTGAGCCTTCTGGCCAGAGCTATCTCTTGAGATTGCAGGGTCTACTACAACCAGTTCGTATGGAAAATGGCAGGACTGAAAATACTCCAGACACTGCTTTAGAAACTGCAGAAAATGGAGGCGTGGCCATCACTCCAGAGTTGCAAGCTGTTGGACCGATACTTGCTGGTCAGTCCACCACGTCATAA 1119 46.65 MAVHGVDFKWYDGFFLSMLATSAIIVAINWKRYYTCTHPLHIWIVVDYMTVFVFRLLMFLDNGLAAGMGLDFGWQQRYARFCGRIVVLSILSVFLYPFLWGWTIVGTLWFREAKNCLPEGQKWGFLIWLLFSYCALICIACMSLGKWLSRRQAHLLRAQQGIPLSEYGVLVDMIRVPDWAFEAAGQEARGMGLEAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTERSSAPVVTTANPYVRPEPSGQSYLLRLQGLLQPVRMENGRTENTPDTALETAENGGVAITPELQAVGPILAGQSTTS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 730622 736253 + Conep19aG0014200.1 Cone19ag0136 458573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0136 372 Pfam Ring finger domain 233 275 IPR001841 -
Cone19ag0136 372 FunFam E3 ubiquitin-protein ligase SIS3 202 280 - -
Cone19ag0136 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Cone19ag0136 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 356 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cone19ag0136 372 SMART ring_2 234 274 IPR001841 -
Cone19ag0136 372 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cone19ag0136 372 SUPERFAMILY RING/U-box 216 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0136 Cone-Chr19:730622 Cone20ag0198 Cone-Chr20:851450 7.42E-06 dispersed
Cone19ag0136 Cone-Chr19:730622 Cone9ag0888 Cone-Chr9:4333137 2.71E-10 transposed
Cone19ag0136 Cone-Chr19:730622 Cone6ag0884 Cone-Chr6:4512765 2.72E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0136 K16284 - vvi:100260484 632.484