Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0139 ATGGTGGGAGAATCTTCGGGGTCTCCGGCAAGCCTCGTCGATCAGCTTGTCGTTCCAGGGGATGTTGTTCTTGATATCTCAAGCATGAGTAACCAGACAATCAAGCTTGGTGCCGGTCTCCGTCAGGACTGTGATTTCATTTCTGTTGTAAAAGCTGGAATATTGAGGTTTTCGAAACCAAACAAATATTGGGTCGAGAGCTCCCAGAAAAGGTATGTACCCCATGCAGAGGATTCTGTTCTTGGAATTGTGGTAGACTCTAAAGCAGATAACTTTCTTGTGGACATTAAAGGACCTGCATTGGCTTTTCTACCCGTCCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGATAGGCACATTACTTTATGTTCGGGTTGTGAAAGCAAACCCGGGTATAAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCAGAATTTGGTCCTCTTAAAGAAGGCTTCATGTTTGAATGCTCGACTGGTCTATCAAGAATGCTTCTAAGCTCACCAACATGTCCGATTCTTGACGCCATGGGGAAGAAGATTTCCTTTGAGACTGCAGTTGGTTTAAATGGCCGTGTTTGGGTCAATGCTGCTTCTCCGTCCACGATCATCGTTATCGTTAATGCAATTATGAACTCGGAATCTTTGAGTGGGGTCCAGCAGAAAATTATGGTCGATAAACTTCTCAAGAACTTGAAGATTTCGAGTTAG 732 44.4 MVGESSGSPASLVDQLVVPGDVVLDISSMSNQTIKLGAGLRQDCDFISVVKAGILRFSKPNKYWVESSQKRYVPHAEDSVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEIGTLLYVRVVKANPGINPELACTDASGKAAEFGPLKEGFMFECSTGLSRMLLSSPTCPILDAMGKKISFETAVGLNGRVWVNAASPSTIIVIVNAIMNSESLSGVQQKIMVDKLLKNLKISS 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 750954 753984 + Conep19aG0014500.1 Cone19ag0139 458576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0139 243 Gene3D K Homology domain, type 1 155 238 IPR036612 GO:0003723(InterPro)
Cone19ag0139 243 Pfam Exosome complex component RRP40, S1 domain 72 154 - -
Cone19ag0139 243 FunFam exosome complex component RRP40 155 238 - -
Cone19ag0139 243 FunFam Exosome complex exonuclease RRP40 8 73 - -
Cone19ag0139 243 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723(InterPro)
Cone19ag0139 243 Pfam Exosome complex exonuclease Rrp40 N-terminal domain 34 71 IPR041054 -
Cone19ag0139 243 SUPERFAMILY Ribosomal L27 protein-like 10 70 - -
Cone19ag0139 243 FunFam Exosome complex component RRP40 74 154 - -
Cone19ag0139 243 PANTHER PNAS-3 RELATED 11 238 IPR026699 GO:0000176(PANTHER)|GO:0000177(PANTHER)|GO:0000178(InterPro)|GO:0000178(PANTHER)|GO:0000467(PANTHER)|GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0034427(PANTHER)|GO:0034475(PANTHER)|GO:0043928(PANTHER)|GO:0071034(PANTHER)|GO:0071035(PANTHER)|GO:0071038(PANTHER)|GO:0071051(PANTHER)
Cone19ag0139 243 SUPERFAMILY Nucleic acid-binding proteins 70 162 IPR012340 -
Cone19ag0139 243 Pfam KH domain 159 207 IPR004088 GO:0003723(InterPro)
Cone19ag0139 243 CDD KH-I_Rrp40 158 236 IPR049469 -
Cone19ag0139 243 Gene3D - 8 73 - -
Cone19ag0139 243 Gene3D - 78 154 IPR012340 -
Cone19ag0139 243 CDD S1_Rrp40 71 156 IPR037319 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0139 K03681 - - rcu:8289013 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0138 Cone-Chr13:798142 Cone19ag0139 Cone-Chr19:750954 1.04E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g754 . . . . Bpe12g00595 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014281 1 1 1 1 1 0 2 0 0 0 0 0 0 1 1 0 0 2 1 0 1 1 1 1 1 0 1 2 1 1 22