Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0140 ATGAAGTTTGTTGCACTTATCAGATCCAATCTTGCCCGTCAAGTTATCCCTCGAATTTTACAAGTCCGCTCCTTCCAGCATGATTTTGTTCCTAGAGACCCCAAGTCCAAGCCCAAACGGTACAAATATCCAGCATGCTATGATCCATATGGCCCTAGGCCCCCACCTTCTGATAAAATCATCCAACTTGCTGAAAGGATTGCATCACTACCCCCAGAAGAACGGTCTCAAATTGGTCCTACTTTGAAGGAAAAACTTACCCTTCCAAAACTGCAGCCCATTTCTACAGAAGGGATGGATTTGGGTTCACAAGGAGGGGCAGTCGGTGGGCCTGCTAAGGTCGAGGAGAAGAAAGAGAAAACAGCGTTTGATGTGAAATTGGAGAAATTTGATGCAGCTGCCAAGATTAAGGTGATCAAAGAGGTTAGGGGTTTTACGAGTTTGGGATTGAAAGAGGCAAAAGATTTGGTCGAGAAAGTTCCTGCTGTGATTAAACAAGGGGTTACTAAAGAAGAGGCAAATCAAATAATAGAGAAGATTAAGGCAGCTGGAGGAGTTGCAGTAATGGAATAA 573 43.98 MKFVALIRSNLARQVIPRILQVRSFQHDFVPRDPKSKPKRYKYPACYDPYGPRPPPSDKIIQLAERIASLPPEERSQIGPTLKEKLTLPKLQPISTEGMDLGSQGGAVGGPAKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRGFTSLGLKEAKDLVEKVPAVIKQGVTKEEANQIIEKIKAAGGVAVME 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 765943 767594 - Conep19aG0014600.1 Cone19ag0140 458577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0140 190 PANTHER 39S RIBOSOMAL PROTEIN L12 37 190 IPR000206 GO:0003729(PANTHER)|GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005840(InterPro)|GO:0006412(PANTHER)|GO:0006412(InterPro)
Cone19ag0140 190 FunFam 50S ribosomal protein L7/L12 119 189 - -
Cone19ag0140 190 Gene3D - 116 189 IPR014719 -
Cone19ag0140 190 Pfam Ribosomal protein L7/L12 C-terminal domain 123 186 IPR013823 GO:0003735(InterPro)|GO:0006412(InterPro)
Cone19ag0140 190 CDD Ribosomal_L7_L12 59 189 IPR000206 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone19ag0140 190 MobiDBLite consensus disorder prediction 31 55 - -
Cone19ag0140 190 SUPERFAMILY ClpS-like 119 189 IPR014719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0140 K02935 - - rcu:8289001 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0596 Cone-Chr15:3062030 Cone19ag0140 Cone-Chr19:765943 2.20E-44 dispersed
Cone19ag0140 Cone-Chr19:765943 Cone4ag1270 Cone-Chr4:10442724 4.89E-35 dispersed
Cone19ag0140 Cone-Chr19:765943 Cone14ag0584 Cone-Chr14:2897429 1.83E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g755 . . Bda06g00597 . . . . Bma12g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0140 . . . . . Blo15g00267 . . Bpe07g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004380 1 2 1 1 1 2 1 2 1 1 2 1 1 3 2 1 2 3 1 2 1 1 2 1 1 1 1 2 1 1 43