Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0142 ATGCAGAGCTCAGCCTGTACATTCTCGCCTTCGCTGCCACTTCTCAAGGCTCAAAGGCCTTCGAATTCAGCTCGCATTGCTGTGTTCAGCTCCACGCGTTCTTCCTCGGCGAATCTTAACGATCTAGGGAGTTCCGGTAATGTCTCTCACTCTTCGTCTTTGCCTCGCCGATCGCGGTCTTTGTCTTCTTCTCCGTTCGCTTCTTCGAGAATCAGGCCATGGAACGGTGTGTCCTTGCTCAGTTCTGATTCGGGATCTAGTCGGTTTGAGGTCAGAGCCACCGCTGTGCCGGAGGACGCAGAGGAGAGTAGCCAGTCAAGTAGCTTGTTTAAGACGTTGGAGCTTGGGGCGTTGTTTGGCTTATGGTACCTCTTCAACATCTACTTCAATATCTACAACAAGCAGGTTTTGAAGGTGTACCAGTTCCCTGTGACAGTCACTACAGTTCAGTTTGCCGTTGGCTCTGTGCTTGTTCTTTTCATGTGGGGTTCTGGTCTTTATAAAAGACCGAAAGTTAGTGGTAAACAGCTTGCAGCAATAGTACCACTGGCAGTTGTTCATACTTTAGGGAACCTTTTCACAAACATGAGTCTTGGAAAAGTGGCTGTATCATTTACTCACACGATAAAAGCTTCAGAGCCTTTCTTTTCAGTCCTCCTATCTGCTATGTTTCTTGGAGAGTTTCCAACTCCATGGGTAGTTGGTTCCCTACTACCAATTGTTGGTGGGGTGGCATTGGCGTCAGCCACTGAAGCTTCATTTAATTGGGCCGGATTTTGGAGTGCCATGGCATCGAATGTGTCAAATCAGTCCCGTAATGTCCTTAGCAAAAAGGTCATGGTGAATAAAGAGGAAAAGATGGACAACATTACTCTCTTCTCAATCATAACATTAATGTCCTTTGTATTGTTAGCACCCGGGTCTATCTTCATGGAAGGTGTTAATTTTACTCCCACCTACCTGCAAGCTGCTGGACTGAATGTTAAACAACTATATACTAGATCTCTTCTTGCGGCACTCTGCTTCCATGCCTATCAACAGGTCTCTTATATGATTCTGCAGAGAGTCTCACCTGTTACCCACTCCGTTGGTAATTGTGTGAAACGGGTGGTGGTCATCGTCAGTTCCGTTATCTTCTTCAAAACACCTGTTTCACCTATCAACTCCCTTGGTACTGGAGTGGCTCTTGCCGGAGTCTTCTTGTATTCTAGGGTGAAGCGAATCAAGTCTAAGCCAAAGACAGCTTAA 1248 46.39 MQSSACTFSPSLPLLKAQRPSNSARIAVFSSTRSSSANLNDLGSSGNVSHSSSLPRRSRSLSSSPFASSRIRPWNGVSLLSSDSGSSRFEVRATAVPEDAEESSQSSSLFKTLELGALFGLWYLFNIYFNIYNKQVLKVYQFPVTVTTVQFAVGSVLVLFMWGSGLYKRPKVSGKQLAAIVPLAVVHTLGNLFTNMSLGKVAVSFTHTIKASEPFFSVLLSAMFLGEFPTPWVVGSLLPIVGGVALASATEASFNWAGFWSAMASNVSNQSRNVLSKKVMVNKEEKMDNITLFSIITLMSFVLLAPGSIFMEGVNFTPTYLQAAGLNVKQLYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPINSLGTGVALAGVFLYSRVKRIKSKPKTA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 787906 791377 - Conep19aG0014800.1 Cone19ag0142 458579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0142 415 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 113 413 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cone19ag0142 415 PANTHER SOLUTE CARRIER FAMILY 35 106 404 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cone19ag0142 415 MobiDBLite consensus disorder prediction 33 68 - -
Cone19ag0142 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 156 248 - -
Cone19ag0142 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 327 406 - -
Cone19ag0142 415 Pfam Triose-phosphate Transporter family 114 403 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0142 Cone-Chr19:787906 Cone9ag1074 Cone-Chr9:6041529 3.91E-68 dispersed
Cone11ag0106 Cone-Chr11:463083 Cone19ag0142 Cone-Chr19:787906 1.88E-143 wgd
Cone13ag0145 Cone-Chr13:911231 Cone19ag0142 Cone-Chr19:787906 4.58E-264 wgd
Cone16ag0098 Cone-Chr16:545209 Cone19ag0142 Cone-Chr19:787906 3.11E-211 wgd
Cone19ag0142 Cone-Chr19:787906 Cone2ag0910 Cone-Chr2:34906514 5.12E-206 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0142 K15283 - csv:101203848 598.971