Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0151 ATGGAGGAACTGTACGGAGCACTCCCCACCATCTCCGGAAATAACTACTATCGTGATCAGCCTGCACCATTCATGGCAGTACCACCACCACCACCACCACCACCACCAGATCATCTTCCCGATCACAATAATAACAATATCAACGTTGTCTTTCCGTCTGTTAACAGTAATCACTATGACCACGATATTCGGAATATCCTCTCATTCGGTTCGGACGGCCGGTCGATTTCCGGTTCGTCTTCTTCAAATAATAATGCGACAGGTCTTCATGATCATGATCTTCGTAGCGATGAGTTTTCCAGTGCAATCAGACTCAAAATCGCTTCTCATCCTCTCTATCCTCAGCTCCTCCAAGGCTATATCGATTGCCAGAAGGTGGGTGCACCGCCGGAAATAGCGCGTCTGCTGGACGAAATCCGACGAGGAAGTCATGACATCTACAAGAGAACCACCGACGACATCGTTTCGTCTTCCGATCCTGAACTCGACGAGTTCATGGAAACGTATTGTGGAATATTGACGAAGTACAAATCGGATCTGGCAAGGTCATTTGATGAAGCTACCTCCTTCCTCAACACCATCGAAACGCAGCTTAAAACGCTTTGCAACGACATCGCTACAACAAGCTCCGTTTCTGATGATGCTGCTGGTCCGTCCGATGATGATCTGAGCGCTGGAGAGATTGATTTACTAGAATGCTCGCATCAGACGGATGAAGATCGAGAGTTGAAGGAAAAACTCTTGCGCAAATATAGTGGTTATATTAGTACCTTAAAGCAAGAGTTCTCCAAGAAGAAGAAGAAAGGGAAGCTACCTAAAGATGCAAGGCAAATCCTTCTTGACTGGTGGAATCTTCACTACAAATGGCCTTACCCTACGGAAGGGGACAAAGTTGGGTTAGCTGAATTAACAGGGCTAGATCAGAAACAGATAAATAACTGGTTTATAAATCAAAGGAAGAGGCATTGGAAGCCATCGGAAAACATGCAATTTGCTGTGATGGACAGTCTTTATGGGTGTTCCTTTTGTGATTAA 1035 45.41 MEELYGALPTISGNNYYRDQPAPFMAVPPPPPPPPPDHLPDHNNNNINVVFPSVNSNHYDHDIRNILSFGSDGRSISGSSSSNNNATGLHDHDLRSDEFSSAIRLKIASHPLYPQLLQGYIDCQKVGAPPEIARLLDEIRRGSHDIYKRTTDDIVSSSDPELDEFMETYCGILTKYKSDLARSFDEATSFLNTIETQLKTLCNDIATTSSVSDDAAGPSDDDLSAGEIDLLECSHQTDEDRELKEKLLRKYSGYISTLKQEFSKKKKKGKLPKDARQILLDWWNLHYKWPYPTEGDKVGLAELTGLDQKQINNWFINQRKRHWKPSENMQFAVMDSLYGCSFCD 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 836902 841667 - Conep19aG0015700.1 Cone19ag0151 458588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0151 344 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone19ag0151 344 SUPERFAMILY Homeodomain-like 263 336 IPR009057 -
Cone19ag0151 344 CDD homeodomain 274 326 IPR001356 GO:0003677(InterPro)
Cone19ag0151 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 332 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone19ag0151 344 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone19ag0151 344 SMART HOX_1 264 329 IPR001356 GO:0003677(InterPro)
Cone19ag0151 344 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone19ag0151 344 Pfam ELK domain 242 263 IPR005539 GO:0003677(InterPro)
Cone19ag0151 344 ProSitePatterns 'Homeobox' domain signature. 300 323 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone19ag0151 344 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677(InterPro)
Cone19ag0151 344 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone19ag0151 344 SMART ELK_2 242 263 IPR005539 GO:0003677(InterPro)
Cone19ag0151 344 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone19ag0151 344 Gene3D - 259 333 - -
Cone19ag0151 344 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1055 Cone-Chr13:8661649 Cone19ag0151 Cone-Chr19:836902 1.13E-97 dispersed
Cone19ag0151 Cone-Chr19:836902 Cone19ag1044 Cone-Chr19:7712741 6.03E-103 dispersed
Cone13ag0151 Cone-Chr13:951520 Cone19ag0151 Cone-Chr19:836902 3.37E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45273 PF00483 NTP_transferase 5.80E-05 CL0110 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0151 - - - 0.0