Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0159 ATGGCTTCCTCATCATCAGCAACGACATACTCTTCACCCTGTGCTGCCTGCAAATTCCTCCGTCGAAAATGCATGTCAAGCTGCATTTTTGCGCCATATTTCCCACCAGAAGAGCCTCAGAAATTCGCCAACGTACACAAAATCTTCGGCGCCAGCAACGTGACGAAGCTTCTCAACGACCTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCTCTCGCCTATGAGGCGGATGCACGTGTCAGGGACCCAGTTTACGGCTGCGTTGGCGCCATCTCTTTTCTGCAGAGGCAAGTCCAGAAGCTGGAGAAAGAGCTTGATGCTGCTAATGCTGATCTCATCCGCCTTGCTTGCAAAGAGATCAACAATCCGACGGTCCATATTGCTCAGCCCATGATGATCAATAGGGCAGGTTCGTCTACTAATAACGATTACTACAATCAGCAGTTTTCTTCTATGCCCTGGAATTTTGATCACAATTTTCCAGCACATTTCAACGGAGGAGAAGGGCAAGGGAATAATTTCTAG 528 49.05 MASSSSATTYSSPCAACKFLRRKCMSSCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEADARVRDPVYGCVGAISFLQRQVQKLEKELDAANADLIRLACKEINNPTVHIAQPMMINRAGSSTNNDYYNQQFSSMPWNFDHNFPAHFNGGEGQGNNF 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 905693 906220 + Conep19aG0016500.1 Cone19ag0159 458596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0159 175 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cone19ag0159 175 Coils Coil 92 119 - -
Cone19ag0159 175 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cone19ag0159 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0159 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0159 Cone-Chr19:905693 Cone1ag0847 Cone-Chr1:54241388 1.41E-53 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone19ag0159 Cone-Chr19:905693 6.88E-107 wgd
Cone16ag0939 Cone-Chr16:9541773 Cone19ag0159 Cone-Chr19:905693 1.47E-62 wgd
Cone16ag0081 Cone-Chr16:414323 Cone19ag0159 Cone-Chr19:905693 1.93E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag0847 . 1 218 AS2 family AT1G65620 71.6 4.0e-80 295.0
Cone5ag0965 . 1 218 AS2 family AT1G65620 70.6 9.8e-79 290.4
Cone9ag1307 . 2 175 AS2 family AT1G65620 58.2 7.6e-47 184.5
Cone6ag1377 . 2 110 AS2 family AT1G65620 80.7 4.9e-46 181.8
Cone16ag0081 . 3 113 AS2 family AT1G65620 75.7 7.1e-45 177.9
Cone16ag0939 . 1 113 AS2 family AT1G65620 71.7 3.9e-43 172.2
Cone19ag0159 . 1 113 AS2 family AT1G65620 71.7 3.3e-42 169.1
Cone13ag0160 . 1 116 AS2 family AT1G65620 69.0 5.6e-42 168.3
Cone6ag1133 . 3 111 AS2 family AT1G65620 72.5 8.1e-41 164.5
Cone5ag1559 . 5 111 AS2 family AT1G65620 66.4 3.4e-39 159.1
Cone9ag1121 . 3 111 AS2 family AT1G65620 67.0 2.4e-37 152.9
Cone6ag1377 . 1 126 AS2 family AT5G66870 79.4 1.4e-52 204.1
Cone6ag1133 . 5 133 AS2 family AT5G66870 75.2 6.1e-51 198.7
Cone9ag1307 . 1 126 AS2 family AT5G66870 75.4 5.1e-50 195.7
Cone5ag1559 . 5 123 AS2 family AT5G66870 73.1 2.0e-49 193.7
Cone9ag1121 . 5 133 AS2 family AT5G66870 70.5 1.1e-47 188.0
Cone1ag0847 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone5ag0965 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone16ag0939 . 1 115 AS2 family AT5G66870 65.2 8.2e-40 161.8
Cone16ag0081 . 1 113 AS2 family AT5G66870 69.9 1.4e-39 161.0
Cone19ag0159 . 11 113 AS2 family AT5G66870 68.9 2.0e-38 157.1
Cone13ag0160 . 10 114 AS2 family AT5G66870 67.6 2.6e-38 156.8
Cone6ag1133 . 8 119 AS2 family AT2G23660 71.4 2.5e-44 176.8
Cone9ag1121 . 8 119 AS2 family AT2G23660 66.1 7.4e-41 165.2
Cone1ag0847 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone5ag0965 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone19ag0159 . 11 114 AS2 family AT2G23660 66.3 6.9e-39 158.7
Cone16ag0081 . 8 113 AS2 family AT2G23660 66.0 1.2e-38 157.9
Cone16ag0939 . 7 113 AS2 family AT2G23660 60.7 5.0e-37 152.5
Cone13ag0160 . 12 114 AS2 family AT2G23660 64.1 6.5e-37 152.1
Cone16ag0939 . 4 116 AS2 family AT3G27650 84.1 1.5e-53 206.5
Cone16ag0081 . 4 114 AS2 family AT3G27650 77.5 4.6e-47 184.9
Cone19ag0159 . 11 117 AS2 family AT3G27650 76.6 1.9e-45 179.5
Cone13ag0160 . 10 118 AS2 family AT3G27650 75.5 9.7e-45 177.2
Cone1ag0847 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone5ag0965 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone9ag1307 . 4 112 AS2 family AT3G27650 69.7 1.3e-41 166.8
Cone6ag1377 . 4 112 AS2 family AT3G27650 69.7 2.2e-41 166.0
Cone6ag1133 . 1 113 AS2 family AT3G27650 61.9 3.0e-38 155.6
Cone16ag0081 . 3 122 AS2 family AT5G63090 87.5 2.0e-57 219.5
Cone13ag0160 . 5 114 AS2 family AT5G63090 88.2 3.0e-53 205.7
Cone19ag0159 . 4 113 AS2 family AT5G63090 87.3 8.6e-53 204.1
Cone16ag0939 . 1 113 AS2 family AT5G63090 85.1 2.3e-50 196.1
Cone1ag0847 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone5ag0965 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone6ag1377 . 2 110 AS2 family AT5G63090 72.5 5.2e-42 168.3
Cone9ag1307 . 2 149 AS2 family AT5G63090 55.9 6.8e-42 167.9
Cone8ag1587 . 16 119 AS2 family AT5G63090 68.3 7.1e-39 157.9
Cone6ag1133 . 6 111 AS2 family AT5G63090 68.9 1.0e-37 154.1
Cone18ag0786 . 4 106 AS2 family AT5G63090 68.9 3.0e-37 152.5
Cone11ag0741 . 4 106 AS2 family AT5G63090 68.0 6.6e-37 151.4
Cone18ag0786 . 3 139 AS2 family AT2G30130 79.6 6.6e-56 214.5
Cone11ag0741 . 3 139 AS2 family AT2G30130 78.8 1.5e-55 213.4
Cone7ag0064 . 3 140 AS2 family AT2G30130 76.1 3.1e-53 205.7
Cone1ag1647 . 3 114 AS2 family AT2G30130 85.7 1.7e-51 199.9
Cone4ag0070 . 3 141 AS2 family AT2G30130 71.9 5.4e-50 194.9
Cone8ag1587 . 11 122 AS2 family AT2G30130 77.7 9.6e-47 184.1
Cone5ag0176 . 3 97 AS2 family AT2G30130 88.4 1.2e-44 177.2
Cone11ag1283 . 47 154 AS2 family AT2G30130 66.7 1.3e-38 157.1
Cone1ag0847 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone5ag0965 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone1ag1630 . 2 114 AS2 family AT2G30130 68.1 4.8e-38 155.2
Cone18ag0297 . 47 154 AS2 family AT2G30130 65.7 4.8e-38 155.2
Cone19ag0159 . 11 126 AS2 family AT2G30130 62.9 1.1e-37 154.1
Cone16ag0081 . 8 124 AS2 family AT2G30130 64.1 1.4e-37 153.7
Cone8ag1587 . 1 169 AS2 family AT1G31320 64.8 4.7e-53 204.9
Cone7ag0064 . 2 118 AS2 family AT1G31320 67.5 1.8e-44 176.4
Cone18ag0786 . 2 117 AS2 family AT1G31320 70.7 4.0e-44 175.3
Cone11ag0741 . 2 117 AS2 family AT1G31320 69.8 8.8e-44 174.1
Cone1ag1647 . 5 113 AS2 family AT1G31320 72.5 3.4e-43 172.2
Cone4ag0070 . 5 118 AS2 family AT1G31320 67.5 7.5e-43 171.0
Cone5ag0176 . 5 96 AS2 family AT1G31320 78.3 3.8e-39 158.7
Cone18ag0297 . 47 215 AS2 family AT1G31320 50.6 5.0e-39 158.3
Cone19ag0159 . 1 127 AS2 family AT1G31320 57.5 1.2e-37 153.7
Cone1ag1630 . 12 127 AS2 family AT1G31320 62.1 4.7e-37 151.8
Cone18ag0297 . 43 215 AS2 family AT2G28500 61.2 1.3e-53 207.2
Cone11ag1283 . 43 215 AS2 family AT2G28500 62.5 2.8e-53 206.1
Cone5ag0326 . 42 133 AS2 family AT2G28500 88.0 7.7e-43 171.4
Cone1ag1339 . 41 133 AS2 family AT2G28500 86.0 1.7e-42 170.2
Cone11ag1078 . 31 149 AS2 family AT2G28500 68.1 8.5e-42 167.9
Cone18ag0498 . 61 153 AS2 family AT2G28500 83.9 3.2e-41 166.0
Cone8ag1587 . 15 127 AS2 family AT2G28500 64.6 3.7e-37 152.5
Cone18ag0786 . 5 113 AS2 family AT2G28500 65.1 1.4e-36 150.6
Cone11ag1283 . 30 215 AS2 family AT1G07900 56.5 2.5e-47 186.0
Cone18ag0297 . 42 215 AS2 family AT1G07900 59.2 2.5e-47 186.0
Cone18ag0498 . 61 224 AS2 family AT1G07900 63.7 4.4e-44 175.3
Cone5ag0326 . 42 159 AS2 family AT1G07900 83.9 1.3e-43 173.7
Cone1ag1339 . 41 158 AS2 family AT1G07900 83.1 2.2e-43 172.9
Cone11ag1078 . 14 213 AS2 family AT1G07900 51.9 3.7e-43 172.2
Cone8ag1587 . 12 169 AS2 family AT1G16530 57.8 1.1e-43 173.7
Cone11ag0741 . 5 121 AS2 family AT1G16530 65.3 3.7e-39 158.7
Cone18ag0786 . 5 119 AS2 family AT1G16530 65.5 1.1e-38 157.1
Cone4ag0070 . 5 128 AS2 family AT1G16530 61.9 1.4e-38 156.8
Cone7ag0064 . 5 127 AS2 family AT1G16530 61.1 1.2e-37 153.7
Cone5ag0152 . 8 156 AS2 family AT2G30340 68.6 3.9e-54 209.1
Cone1ag1630 . 4 124 AS2 family AT2G30340 78.7 1.4e-51 200.7
Cone1ag1630 . 1 131 AS2 family AT2G40470 87.8 1.6e-60 229.9
Cone5ag0152 . 30 161 AS2 family AT2G40470 87.9 2.7e-60 229.2
Cone8ag1587 . 15 124 AS2 family AT2G40470 64.5 8.9e-40 161.0
Cone7ag0064 . 5 167 AS2 family AT2G40470 51.5 5.4e-37 151.8
Cone1ag0847 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone5ag0965 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone18ag0386 . 4 136 AS2 family AT3G11090 66.2 1.5e-45 179.9
Cone11ag1202 . 4 151 AS2 family AT3G11090 63.8 2.0e-45 179.5
Cone7ag1007 . 1 124 AS2 family AT2G42440 76.6 1.8e-50 196.8
Cone4ag1122 . 9 128 AS2 family AT2G42440 63.6 3.5e-38 156.0
Cone7ag1008 . 11 127 AS2 family AT2G42440 64.4 1.3e-37 154.1
Cone7ag1007 . 4 137 AS2 family AT3G58190 76.1 5.4e-54 208.4
Cone7ag1008 . 1 127 AS2 family AT3G58190 69.5 5.6e-43 171.8
Cone4ag1122 . 9 120 AS2 family AT3G58190 71.4 6.1e-42 168.3
Cone7ag1007 . 1 110 AS2 family AT2G31310 61.8 1.0e-37 154.1
Cone7ag1008 . 1 219 AS2 family AT2G42430 54.6 3.8e-56 215.7
Cone4ag1122 . 1 221 AS2 family AT2G42430 52.8 1.3e-53 207.2
Cone7ag1007 . 3 109 AS2 family AT2G42430 73.8 4.5e-41 165.6
Cone3ag0542 . 4 126 AS2 family AT2G42430 61.8 7.9e-38 154.8
Cone7ag1008 . 13 115 AS2 family AT2G45420 76.7 3.7e-41 166.0
Cone4ag1122 . 14 116 AS2 family AT2G45420 76.7 6.2e-41 165.2
Cone7ag1007 . 7 109 AS2 family AT2G45420 70.9 6.9e-40 161.8
Cone3ag0542 . 5 106 AS2 family AT2G45420 75.5 9.0e-40 161.4
Cone3ag0542 . 5 118 AS2 family AT3G03760 87.7 9.0e-51 198.0
Cone4ag1122 . 8 120 AS2 family AT3G03760 69.9 3.0e-38 156.4
Cone7ag1007 . 2 111 AS2 family AT3G03760 67.3 1.1e-37 154.5
Cone7ag1008 . 12 126 AS2 family AT3G03760 67.8 1.5e-37 154.1
Cone7ag1007 . 2 107 AS2 family AT4G00210 65.1 6.0e-37 151.8
Cone4ag1122 . 2 116 AS2 family AT4G00210 61.7 1.3e-36 150.6
Cone7ag1008 . 4 115 AS2 family AT2G45410 64.3 4.7e-38 155.2
Cone4ag1122 . 7 116 AS2 family AT2G45410 63.6 3.1e-37 152.5
Cone17ag0097 . 36 145 AS2 family AT3G13850 70.9 3.7e-41 166.0
Cone20ag1310 . 33 137 AS2 family AT3G13850 73.3 4.1e-40 162.5
Cone19ag0280 . 1 160 AS2 family AT1G68510 61.8 2.6e-54 209.5
Cone13ag0286 . 1 163 AS2 family AT1G68510 59.5 4.4e-54 208.8
Cone19ag0834 . 1 139 AS2 family AT1G68510 62.2 8.0e-48 188.0
Cone13ag0829 . 1 156 AS2 family AT1G68510 56.9 1.7e-45 180.3
Cone6ag1448 . 1 116 AS2 family AT1G68510 59.3 6.8e-39 158.3
Cone11ag0317 . 1 268 AS2 family AT1G67100 52.6 8.2e-69 257.7
Cone19ag0280 . 1 137 AS2 family AT1G67100 75.5 2.4e-60 229.6
Cone13ag0286 . 1 137 AS2 family AT1G67100 73.4 3.5e-59 225.7
Cone19ag0834 . 1 136 AS2 family AT1G67100 62.6 2.0e-46 183.3
Cone13ag0829 . 1 136 AS2 family AT1G67100 59.7 3.1e-44 176.0
Cone6ag1448 . 1 110 AS2 family AT1G67100 68.2 7.0e-44 174.9
Cone9ag1373 . 1 101 AS2 family AT1G67100 60.9 4.9e-37 152.1
Cone11ag0317 . 1 268 AS2 family AT3G02550 57.4 2.5e-74 276.2
Cone19ag0280 . 1 137 AS2 family AT3G02550 75.9 5.1e-59 225.3
Cone13ag0286 . 1 138 AS2 family AT3G02550 73.2 2.1e-57 219.9
Cone19ag0834 . 1 139 AS2 family AT3G02550 59.2 6.1e-44 175.3
Cone13ag0829 . 1 139 AS2 family AT3G02550 61.2 7.9e-44 174.9
Cone6ag1448 . 1 118 AS2 family AT3G02550 61.9 5.3e-40 162.2
Cone6ag1448 . 1 237 AS2 family AT5G67420 59.5 9.7e-68 254.2
Cone9ag1373 . 1 228 AS2 family AT5G67420 56.2 4.4e-60 228.8
Cone13ag0286 . 3 112 AS2 family AT5G67420 68.2 3.4e-44 176.0
Cone19ag0280 . 3 112 AS2 family AT5G67420 66.4 4.9e-43 172.2
Cone19ag0834 . 3 106 AS2 family AT5G67420 59.6 3.6e-38 156.0
Cone6ag1448 . 1 236 AS2 family AT3G49940 60.1 1.6e-67 253.4
Cone9ag1373 . 1 227 AS2 family AT3G49940 58.1 3.5e-62 235.7
Cone19ag0280 . 3 112 AS2 family AT3G49940 68.2 2.2e-43 173.3
Cone13ag0286 . 3 112 AS2 family AT3G49940 67.3 4.8e-43 172.2
Cone11ag0317 . 3 112 AS2 family AT3G49940 67.3 1.1e-42 171.0
Cone19ag0834 . 3 106 AS2 family AT3G49940 60.6 5.2e-37 152.1
Cone6ag1448 . 1 237 AS2 family AT4G37540 57.1 4.3e-65 245.4
Cone9ag1373 . 1 228 AS2 family AT4G37540 55.3 2.3e-58 223.0
Cone13ag0286 . 3 113 AS2 family AT4G37540 64.9 6.8e-42 168.3
Cone19ag0280 . 3 113 AS2 family AT4G37540 65.8 2.0e-41 166.8
Cone19ag0834 . 3 115 AS2 family AT4G37540 57.5 1.5e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004254 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45275 PF07887 Calmodulin_bind 1.30E-113 No_clan Cone TF