Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0159 ATGGCTTCCTCATCATCAGCAACGACATACTCTTCACCCTGTGCTGCCTGCAAATTCCTCCGTCGAAAATGCATGTCAAGCTGCATTTTTGCGCCATATTTCCCACCAGAAGAGCCTCAGAAATTCGCCAACGTACACAAAATCTTCGGCGCCAGCAACGTGACGAAGCTTCTCAACGACCTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCTCTCGCCTATGAGGCGGATGCACGTGTCAGGGACCCAGTTTACGGCTGCGTTGGCGCCATCTCTTTTCTGCAGAGGCAAGTCCAGAAGCTGGAGAAAGAGCTTGATGCTGCTAATGCTGATCTCATCCGCCTTGCTTGCAAAGAGATCAACAATCCGACGGTCCATATTGCTCAGCCCATGATGATCAATAGGGCAGGTTCGTCTACTAATAACGATTACTACAATCAGCAGTTTTCTTCTATGCCCTGGAATTTTGATCACAATTTTCCAGCACATTTCAACGGAGGAGAAGGGCAAGGGAATAATTTCTAG 528 49.05 MASSSSATTYSSPCAACKFLRRKCMSSCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEADARVRDPVYGCVGAISFLQRQVQKLEKELDAANADLIRLACKEINNPTVHIAQPMMINRAGSSTNNDYYNQQFSSMPWNFDHNFPAHFNGGEGQGNNF 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 905693 906220 + Conep19aG0016500.1 Cone19ag0159 458596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0159 175 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cone19ag0159 175 Coils Coil 92 119 - -
Cone19ag0159 175 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cone19ag0159 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0159 Cone-Chr19:905693 Cone1ag0847 Cone-Chr1:54241388 1.41E-53 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone19ag0159 Cone-Chr19:905693 6.88E-107 wgd
Cone16ag0939 Cone-Chr16:9541773 Cone19ag0159 Cone-Chr19:905693 1.47E-62 wgd
Cone16ag0081 Cone-Chr16:414323 Cone19ag0159 Cone-Chr19:905693 1.93E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45275 PF07887 Calmodulin_bind 1.30E-113 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0159 - - - 0.0