Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0164 ATGGATCCGAACCCTAAAAGCTTCCCTATCCTCTCCTACGTCATGAACCGAATCCCTTCCATCGGACCTCGCTTCGGCACCTCCCCCAGGGCCGACTCCTGCTCCTGTTCGATCCAAGTCGACATCGAACAGCCTGCCACTCCGCCGCCTTCCGATCCTTCCTCGTCTTCTTCCGGTCAAATCTCCGACCACATGCCGCATCTGACGAATCCGAAAGTCCTTGCGGCTATGACGCGCGCCGTAGGCGACGTGGCTCAGACCCGATCCGTACTCAAAACCCTTGGTGAGCGACCTGATCATGAGACTGTAGACGCGGCGAAAGCGAGGCTCGCTGAGATCGAACACAATCTGTCCAAGCAGCTCGAGGAAATTGTTCTCTCTCCTCGTCCCGCTGATGTTGACCGCCTTGAGTATCGAACTCACCAGGCGGAGAAGGAGACCGATGTACGGAAAGCTGCGGAAAGAGAGAAGCAGGGGTGTAAGGCTGTACTTCAATTGCATGAAATGCACGACGCGTATGAGAAGTTGTTGAGGCAAGCGGAGGAGAGGCTTGTGAAGATTTACAGGTCGGTCGAAGCAGGTGAGGAGCAAGTTTGGGAGGAGGAAGGGGAGGAGAAAGAGGTTGTGAAAGAGGAGATTAATGAGGAAGTGGTGGGGATTCTTCATGAGGCTGATGGGAAAGTTCTGGAGCGTGTGGATCTTTCCGACCGGCAGATTCGGTTTTTGCCAGAAGCATTTGGCCGGATATCTGGATTGGTGGTCCTCAATCTTTCCGGCAATCAGCTTCAGGTCATTCCTGACTCCATAGCCGGTTTAGAAAAGCTTGAGGAGTTGAATGCATCTTCTAATCTATTGGAGTCTCTTCCAGACTCGATTGGCCTGTTGCAAAAGCTCAAACTCTTAAACGTCGCTGGGAACAAGCTAAAAGCCCTTCCCGACTCCATATGCAGTTGCAGGTCACTAGTGGAGTTGGATGTGGGATTCAATGACCTCACATACTTGCCAACAAACCTCGGCTATGAGTTAGTCAACTTACAGAAGCTTGATATCCAACTAAACAAGCTCCAGTCCATTCCCTCGTCTGTCTGTGAAATGAGATCTCTTCTCTTCTTAGATGCTCACTTCAACGAAATTAGAGGCCTTCCTCTCGCCATAGGGAAGCTAATAAACCTAGAATATCTCAACCTAAGCAGTAACTTTAGTGACTTAAAAGAACTCCCAGATACTTTTGGAGACTTAACCAACCTGCAAGAACTTGATCTGAGCAACAACCAGATCCGGGTCCTACCCGATACTTTTGGGTGTCTAGACAATTTGAAGAAACTCAACTTGGAACAGAACCCAATTGTTATACCACCTCCAGAAGTTATTAATGACGGGGTGGAAGCTGTTAAGATCTTCATGGCAAAGAGATGGCTCGAGATTCTGGTTGAAGTAGAGAGGAAGAGCATGGTTGAAGTACAGGAAGAAGATCAACAGACAGGTTGGTTGACTAGAAGCACTTCTTGGTTGAAGACTTATGCTTTGAATGTTTACGGAAGCGTTTCAGAATATGTTGGCAGTCCTAAGTCTCCTAGGGACCTGTATCTTGATCATCAGCCATGA 1605 48.91 MDPNPKSFPILSYVMNRIPSIGPRFGTSPRADSCSCSIQVDIEQPATPPPSDPSSSSSGQISDHMPHLTNPKVLAAMTRAVGDVAQTRSVLKTLGERPDHETVDAAKARLAEIEHNLSKQLEEIVLSPRPADVDRLEYRTHQAEKETDVRKAAEREKQGCKAVLQLHEMHDAYEKLLRQAEERLVKIYRSVEAGEEQVWEEEGEEKEVVKEEINEEVVGILHEADGKVLERVDLSDRQIRFLPEAFGRISGLVVLNLSGNQLQVIPDSIAGLEKLEELNASSNLLESLPDSIGLLQKLKLLNVAGNKLKALPDSICSCRSLVELDVGFNDLTYLPTNLGYELVNLQKLDIQLNKLQSIPSSVCEMRSLLFLDAHFNEIRGLPLAIGKLINLEYLNLSSNFSDLKELPDTFGDLTNLQELDLSNNQIRVLPDTFGCLDNLKKLNLEQNPIVIPPPEVINDGVEAVKIFMAKRWLEILVEVERKSMVEVQEEDQQTGWLTRSTSWLKTYALNVYGSVSEYVGSPKSPRDLYLDHQP 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 936595 939205 + Conep19aG0017000.1 Cone19ag0164 458601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0164 534 Pfam Leucine Rich repeat 318 332 IPR001611 GO:0005515(InterPro)
Cone19ag0164 534 ProSiteProfiles Leucine-rich repeat profile. 344 365 IPR001611 GO:0005515(InterPro)
Cone19ag0164 534 ProSiteProfiles Leucine-rich repeat profile. 415 436 IPR001611 GO:0005515(InterPro)
Cone19ag0164 534 Coils Coil 103 123 - -
Cone19ag0164 534 Gene3D Ribonuclease Inhibitor 161 394 IPR032675 -
Cone19ag0164 534 FunFam Plant intracellular Ras-group-related LRR protein 9 145 333 - -
Cone19ag0164 534 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515(InterPro)
Cone19ag0164 534 Pfam Leucine rich repeat 229 285 IPR001611 GO:0005515(InterPro)
Cone19ag0164 534 SMART LRR_typ_2 413 435 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 272 294 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 295 318 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 388 412 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 342 365 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 319 341 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 436 459 IPR003591 -
Cone19ag0164 534 SMART LRR_typ_2 249 271 IPR003591 -
Cone19ag0164 534 SUPERFAMILY L domain-like 227 454 - -
Cone19ag0164 534 Coils Coil 163 197 - -
Cone19ag0164 534 MobiDBLite consensus disorder prediction 42 66 - -
Cone19ag0164 534 SMART LRR_bac_2 342 361 - -
Cone19ag0164 534 SMART LRR_bac_2 388 409 - -
Cone19ag0164 534 SMART LRR_bac_2 318 337 - -
Cone19ag0164 534 SMART LRR_bac_2 272 291 - -
Cone19ag0164 534 SMART LRR_bac_2 249 268 - -
Cone19ag0164 534 SMART LRR_bac_2 295 314 - -
Cone19ag0164 534 SMART LRR_bac_2 413 432 - -
Cone19ag0164 534 PANTHER LEUCINE-RICH REPEAT-CONTAINING 115 350 IPR050715 GO:0004674(PANTHER)|GO:0007165(PANTHER)
Cone19ag0164 534 FunFam Plant intracellular Ras-group-related LRR protein 2 337 511 - -
Cone19ag0164 534 Gene3D Ribonuclease Inhibitor 395 460 IPR032675 -
Cone19ag0164 534 ProSiteProfiles Leucine-rich repeat profile. 274 295 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0164 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0167 Cone-Chr13:1042578 Cone19ag0164 Cone-Chr19:936595 2.00E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37