Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0166 ATGGAATCTGGGAGTAGGTTTTACCCTGGTAGTGATGAGTTTAGGTTGGATTCAAAGTGGCTGATTGATCCTAAGCTTCTTTTTGTTGGGCCAAGGATTGGAGAAGGTGCTCATGCTAAAGTCTATGAGGGCAAATATAAAAACCAGACAGTTGCTATCAAAATTGTTCATAAAGGGGAAAGCCAGGAGGAGATTATCAAGAGAGATGCAAGATTTGCTAGAGAGGTTCAAATGTTATCCCGAGTCCAACATAAAAACTTAGTCAAGTTTATCGGTGCTTGCAAGGAGCCAGTAATGGTGATAGTTACGGAGCTGTTATCGGGTGGCACGTTACGCAAGTACTTGCTGAATATGAGGCCAAAGTGTTTGGACACCCGTTTAGCCGTTGGTTTTGCACTAGATATTACTCGTGCTATGGAATGTTTGCACTCCCATGGTATCATTCATCGAGATTTAAAACCTGAGAACTTGCTCTTGACTACAGATCAGAAAACAGTCAAATTAGCTGATTTCGGTTTAGCGAGAGAGGAGTCATTGACAGAAATGATGACTGCTGAAACCGGGACCTACCGTTGGATGGCTCCAGAGTTGTATAGTACTGTTACACTAAGGCAAGGGGAGAAGAAACATTACAATCATAAAGTGGATGCTTATAGCTTTGCAATCGTGTTGTGGGAACTTTTGCACAACAAATTGCCCTTTGAAGGCATGTCAAACCTCCAAGCTGCGTATGCTGCCGCTTTTAAGAATGTACGACCTAGTGCTGATAATGTTCCGGAAGAATTGTCTATCATTCTAACTTCATGCTGGCAAGAGGACGCTAATGCTCGGCCCAATTTCGGTCAAATAATCCAAATGCTGCTTAATTATCTCTACACTATCTCTCCTCCAGAGCCCGTCATTCCTTCTCGGATTTTCGCCCCAGAAAACATGGTATTACCACCAGAATCTCCCGGCACAAGCTCTTTGATGGCAGTACGTGATGATTCTGGGGTTACCCTGAAAATAAGTCCGAAAGGGTTTTTCTTCTGCTTCAATGAGTGTTATTAA 1050 42.95 MESGSRFYPGSDEFRLDSKWLIDPKLLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGESQEEIIKRDARFAREVQMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDTRLAVGFALDITRAMECLHSHGIIHRDLKPENLLLTTDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSADNVPEELSIILTSCWQEDANARPNFGQIIQMLLNYLYTISPPEPVIPSRIFAPENMVLPPESPGTSSLMAVRDDSGVTLKISPKGFFFCFNECY 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 953893 959116 + Conep19aG0017200.1 Cone19ag0166 458603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0166 349 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
Cone19ag0166 349 Gene3D Transferase(Phosphotransferase) domain 1 107 295 - -
Cone19ag0166 349 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Cone19ag0166 349 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 CDD STKc_MAP3K-like 33 287 - -
Cone19ag0166 349 FunFam Kinase suppressor of Ras 1 16 106 - -
Cone19ag0166 349 PANTHER SERINE-THREONINE PROTEIN KINASE 21 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone19ag0166 349 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0166 349 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Cone19ag0166 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0166 Cone-Chr19:953893 Cone19ag1445 Cone-Chr19:9410125 1.92E-142 dispersed
Cone11ag0095 Cone-Chr11:406377 Cone19ag0166 Cone-Chr19:953893 1.93E-141 wgd
Cone13ag0169 Cone-Chr13:1053186 Cone19ag0166 Cone-Chr19:953893 1.49E-246 wgd
Cone18ag1380 Cone-Chr18:9463826 Cone19ag0166 Cone-Chr19:953893 2.38E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82367 PF00412 LIM 1.70E-09 CL0167 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0166 - - - 0.0