Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0184 ATGGAGAGCTTTGAATTCCATGAACTTGACTTGAAAAATGAGGAGAGCTTATGGAATTTGTATGAGAGTTGGAGGAGCCATCATACCATCTCTAGAAGCATTGAAGAGAAGATCAAACGTTTTAATGTGTTCAAGCATAATGTTTTTCATGTCCATAAGACGAACAGAATGAACAAGCCTTATAAGCTGAGATTGAACAAGTTTGCAGATTTGACTAATCATGAGTTCAAGAGTAGCTATGCCGGTTCCAAGATAGGCCATCATAAGATGTTTCTAGAGGCTTCTAGGGGGACCAATGGAAGTTTCATGTATGAGAAGGTGAAAAGGGTTCCTCCTTCTGTTGATTGGAGGAAGAAAGGTGCTGTTTCTGATGTTAAGGATCAAGGCCAATGTGGAAGTTGCTGGGCATTTTCTGCGGTAGCAGCCGTCGAGGGGATAAACCAAATCAAAACAGAGAAGCTAATTCCATTGTCCGAACAAGAGTTAATAGATTGTGACACTGAACAAAATCAAGGATGTAATGGAGGTCTGATGGACATAGCTTTTGAATTCATCAAGCAAAAAGAAGGCTTGACAACAGAAATCATTTATCCTTATCTAGCTCGAGTTGGAACTTGTGACAAATCCAAGGCGAATTCAGCTGCAGTTTCTATCAACGGGCATGAAAAGGTTCCGGCAAATGATGAAGATGCATTGCTCAAAGCAGTTGCTAATCAGCCGGTATCTGTGGCTATAGATGCCGGCGATTTCAATTTCCAATTCTACTCGGAGGGGGTGTTTACGGGAAGATGCGGGACGGACCTAAATCACGGTGTTGTGGTCGTCGGCTATGGAACGACTCTTGATGGAACTAAGTATTGGATAGTGAAAAATTCATGGGGACCAGAATGGGGTGAGAAAGGTTACATAAGAATGGAGAGAGGTGTCTCGGACCAAGAAGGACTATGCGGTATAGCAATGGAGGCATCGTATCCTGTCAAGAACTCGCCGAAGAATCCGGGATCTGGATCTTCAAGTTATCCCAAGGATGAGCTCTAA 1038 42.97 MESFEFHELDLKNEESLWNLYESWRSHHTISRSIEEKIKRFNVFKHNVFHVHKTNRMNKPYKLRLNKFADLTNHEFKSSYAGSKIGHHKMFLEASRGTNGSFMYEKVKRVPPSVDWRKKGAVSDVKDQGQCGSCWAFSAVAAVEGINQIKTEKLIPLSEQELIDCDTEQNQGCNGGLMDIAFEFIKQKEGLTTEIIYPYLARVGTCDKSKANSAAVSINGHEKVPANDEDALLKAVANQPVSVAIDAGDFNFQFYSEGVFTGRCGTDLNHGVVVVGYGTTLDGTKYWIVKNSWGPEWGEKGYIRMERGVSDQEGLCGIAMEASYPVKNSPKNPGSGSSSYPKDEL 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1168187 1169692 + Conep19aG0019000.1 Cone19ag0184 458621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0184 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 128 139 IPR000169 -
Cone19ag0184 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 286 305 IPR025661 -
Cone19ag0184 345 PRINTS Papain cysteine protease (C1) family signature 270 280 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone19ag0184 345 PRINTS Papain cysteine protease (C1) family signature 286 292 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone19ag0184 345 PRINTS Papain cysteine protease (C1) family signature 128 143 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone19ag0184 345 FunFam Senescence-specific cysteine protease SAG39 1 327 - -
Cone19ag0184 345 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 12 319 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cone19ag0184 345 MobiDBLite consensus disorder prediction 324 345 - -
Cone19ag0184 345 Pfam Papain family cysteine protease 110 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone19ag0184 345 Gene3D Cysteine proteinases 1 328 - -
Cone19ag0184 345 CDD Peptidase_C1A 111 325 IPR039417 -
Cone19ag0184 345 SMART Inhibitor_I29_2 21 76 IPR013201 -
Cone19ag0184 345 Pfam Cathepsin propeptide inhibitor domain (I29) 21 76 IPR013201 -
Cone19ag0184 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 268 278 IPR025660 -
Cone19ag0184 345 SUPERFAMILY Cysteine proteinases 15 327 IPR038765 -
Cone19ag0184 345 SMART pept_c1 110 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0184 K16292 - - rcu:8278243 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0184 Cone-Chr19:1168187 Cone5ag1547 Cone-Chr5:10710207 4.46E-116 dispersed
Cone19ag0184 Cone-Chr19:1168187 Cone3ag1253 Cone-Chr3:31375442 1.76E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g875 . Blo16g00242 . . . . Bma06g00236 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0184 . . . . . . Bda11g01632 . . Bpe15g00130 Bma03g01289 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127