Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0188 ATGGCATCGGAAGAGGGATTTTGGATGGATGAGCAGAGGCAGCAGTTAAAAGTAGCGTGTGAAAGTGTGGAGGCTTTGTCATTATCATCCCCAAAGTCGCTCAAGCCCATGCTGTCTGAACATCATGTAAGAGCTCCTGGTGGTGGGAACATGTTGGGGAATGTCCGTCGCACACACTCGGGCAAGCTTTGGCGAGTGAAGAAAGATGGGGCTGGTGGTAAAGGCACCTGGGGGAAGCTGCTCGACACCGATGGTGATTCTCACATGGACAAGAATGATCCTAATTATGACAGCGGAGAGGAACCATATCAACTTGTCGAGGCTGCAGGTTCGGATGCTTTAGATGAATACAAGAAACGCATAGTCTCCATTGTAGATGAATATTTCAGCACTGGTGATGCTGAATTGGCTGCAAATGATCTTAGAGAACTAGGCTCAAACCTGTACCATCCTTACTTTGTGAAGCGTCTTGTTTCCATGGCCCTGGACAGGCATGACAAGGAAAAGGAAATGGCTTCGGTTTTGCTGTCAGCATTTTATGTTGACGTCATGAGCCCTAGTCAGATCAGAGATGGATTCTTCATGCTTCTAGAATCTACTGATGATCTTGCATTAGACATACTAGATGCAGTTGATATCCTTGCCTTGTTTGTAGCGCGTGCTGTTGTTGATGACATTCTTCCTCCAGCTTTTCTCTCAAGAGCTAAGAAATCTCTCAAAGAAAATTCCAAAGGGTTGGGGATTGTCCAAACAGCTGAAAAGACCTATCTCTCTGCCCCACATCATGCCGAATTTGTTTTGGGGAAATGGGGTGGGACCACTCTCATCACTGTCGAGGAAGTGAAGAAAAAGATTACTAATCTTTTAAGGGAATATGTTGAAAGTGGAGACATAGATGAGGCTTGTAGGTCTATTAGAGAATTGGGTGTTTCCTTCTTTCACCATGAGGTTGTAAAAATGGCCTTAATTCTTGCCATGGAGAACATAGCTGCTGAGCCAGCATTATTGGACCTCTTGGCTGAAGCTGCTGAGCAAGGGCTGATAAGTTCAAGTCAAGTGATAAAAGGGTTTTCCCGTTTAGCAGATTGTCTAGATGACCTTGTCCTAGACATTCCAGCAGCAAAAAATTTGTTCGAAATCTTAGTTCCTACTGCTATTTCTCAAGGATGGCTTGATCCTTCGTGGAGATTCCTTAATGAACCAATACCTCCAACTGATGATGAAAGGTTGAGACAGTATAAGGAAGAAGTTAAGGCTATAATCCAGGAATATTTCCTCTCGGATGATATTCCTGAATTAATCCACAGCCTTCAAGATATAAGGGCACCTGAGTACAACCCTATATTTCTAAAGAGGCTGATTTCCTCTGCCATGGACAGGAAGAACAGAGAAAAGGAAATGGCATCTGTTCTTCTCTCTGCCCTTCACATTGAGATTTTCTCAACTGAGGATATGGTAGATGGGTTCATCTTGCTTCTAGAATCTGCTGAAGATACATCACTAGACATTCTGGATGCTTCCAGTGAGCTATCTCTTTTCCTAGCCCGAGCCGTGATAGACGATGTGTTGGCCCCACTTAATCTAGAGGAGATAGCAAGTAGATCTCAGGGAAACAGTACTGGGCTTGAGATCGTGAAAATGGCCCGGTCACTGATCTCGGCTCGTCATGCCGGAGAGAGGCTCCTAAGGTGTTGGGGCGGTGGAAGCGGGTGGGCCGTAGAGGATGCAAAGGACAAGATACAGAAGCTTCTCGAAGAATATGAGAGTGGAGGTGTAGTGAGTGAGGCTTGCCAATGTATAAGGGATCTAGGAATGCCATTTTTCAACCATGAGGTGGTGAAGAAGGCTTTAGTTATGGCTATGGAAAAGAAGAATGATAGAATGCTTGATCTTTTGCAGGTGTGTTTTAATGAAGGTTTAATTACTACTAATGAGATAAGTAAAGGGTTTACTAGGATTAAGGATGGGCTTGATGATCTTGCTCTCGACATTCCAAATGCCAAGGAGAAATTTAGTTTCTATGTTGAATATGGTAGGAGTAATGGTTGGCTGTTGCCCACTTTAGGTTCTGCCTGA 2076 44.27 MASEEGFWMDEQRQQLKVACESVEALSLSSPKSLKPMLSEHHVRAPGGGNMLGNVRRTHSGKLWRVKKDGAGGKGTWGKLLDTDGDSHMDKNDPNYDSGEEPYQLVEAAGSDALDEYKKRIVSIVDEYFSTGDAELAANDLRELGSNLYHPYFVKRLVSMALDRHDKEKEMASVLLSAFYVDVMSPSQIRDGFFMLLESTDDLALDILDAVDILALFVARAVVDDILPPAFLSRAKKSLKENSKGLGIVQTAEKTYLSAPHHAEFVLGKWGGTTLITVEEVKKKITNLLREYVESGDIDEACRSIRELGVSFFHHEVVKMALILAMENIAAEPALLDLLAEAAEQGLISSSQVIKGFSRLADCLDDLVLDIPAAKNLFEILVPTAISQGWLDPSWRFLNEPIPPTDDERLRQYKEEVKAIIQEYFLSDDIPELIHSLQDIRAPEYNPIFLKRLISSAMDRKNREKEMASVLLSALHIEIFSTEDMVDGFILLLESAEDTSLDILDASSELSLFLARAVIDDVLAPLNLEEIASRSQGNSTGLEIVKMARSLISARHAGERLLRCWGGGSGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQVCFNEGLITTNEISKGFTRIKDGLDDLALDIPNAKEKFSFYVEYGRSNGWLLPTLGSA 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1185878 1189529 + Conep19aG0019400.1 Cone19ag0188 458625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0188 691 Gene3D - 268 397 - -
Cone19ag0188 691 Gene3D - 563 689 - -
Cone19ag0188 691 SUPERFAMILY ARM repeat 277 396 IPR016024 -
Cone19ag0188 691 ProSiteProfiles MI domain profile. 575 691 IPR003891 -
Cone19ag0188 691 MobiDBLite consensus disorder prediction 75 99 - -
Cone19ag0188 691 SMART ma3_7 413 524 IPR003891 -
Cone19ag0188 691 SMART ma3_7 576 685 IPR003891 -
Cone19ag0188 691 SMART ma3_7 117 228 IPR003891 -
Cone19ag0188 691 SMART ma3_7 281 392 IPR003891 -
Cone19ag0188 691 FunFam programmed cell death protein 4 404 556 - -
Cone19ag0188 691 Gene3D - 110 256 - -
Cone19ag0188 691 Gene3D - 405 556 - -
Cone19ag0188 691 ProSiteProfiles MI domain profile. 116 237 IPR003891 -
Cone19ag0188 691 MobiDBLite consensus disorder prediction 81 97 - -
Cone19ag0188 691 SUPERFAMILY ARM repeat 572 687 IPR016024 -
Cone19ag0188 691 SUPERFAMILY ARM repeat 115 275 IPR016024 -
Cone19ag0188 691 ProSiteProfiles MI domain profile. 280 401 IPR003891 -
Cone19ag0188 691 ProSiteProfiles MI domain profile. 412 533 IPR003891 -
Cone19ag0188 691 Pfam MA3 domain 414 523 IPR003891 -
Cone19ag0188 691 Pfam MA3 domain 577 684 IPR003891 -
Cone19ag0188 691 Pfam MA3 domain 118 228 IPR003891 -
Cone19ag0188 691 Pfam MA3 domain 281 392 IPR003891 -
Cone19ag0188 691 SUPERFAMILY ARM repeat 410 569 IPR016024 -
Cone19ag0188 691 FunFam programmed cell death protein 4 107 260 - -
Cone19ag0188 691 PANTHER PROGRAMMED CELL DEATH 4 6 687 IPR039778 GO:0045892(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0188 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0188 Cone-Chr19:1185878 Cone7ag1477 Cone-Chr7:10376568 2.48E-210 dispersed
Cone13ag0195 Cone-Chr13:1228834 Cone19ag0188 Cone-Chr19:1185878 0 transposed
Cone13ag0194 Cone-Chr13:1227372 Cone19ag0188 Cone-Chr19:1185878 1.52E-90 wgd
Cone16ag0054 Cone-Chr16:279373 Cone19ag0188 Cone-Chr19:1185878 0 wgd
Cone19ag0188 Cone-Chr19:1185878 Cone2ag0946 Cone-Chr2:35131176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45