Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0189 ATGGCGTTGTCAATTCCTTTCAACTATGTTTTCTCGGCAGCGCAATCGTCTCCCGTAACTCCATACTTTTCCAGGATCAAGACCGCTATTGTTACTGATTTCAGGCCCCATGGAAGATCCCTACCTACTTCTTCATCTTCTCTATTCGGTACAAGACTTGTTACCACTAAAGGTCAAGTCTGGAGTATAATACGACGCTTAAGAAATGCTTCTAACGGTGCCATCACCTGCTCTTCTTCTTCTTCCTCTGATCTTCCATCTGCTCTTCTTTTCGATTGCGATGGCGTCCTCGTTGACACTGAAAAGGATGGCCATCGGATTTCCTTCAATGACACTTTCCAGGAGAAAGAATTGGGGGTCGCTTGGGATGTTGATTTGTATGGCGAGTTACTCAAAATTGGAGGCGGCAAAGAAAGAATGACATCATATTTTAACAAGACGGGTTGGCCCGATAAAGCACCAAAGGATGAAGATGAAAGAAAGGAATTCATCGCTTCACTTCACAAGCGGAAAACCGAGCTTTTCATGGCTCTTATTGAGAAGAAATTGCTCCCTCTTCGACCTGGTGTAGCAAGATTGATCGATCAGGCTTTAGGGAAAGGAATCAAAGTAGCAGTTTGTAGCACTTCGAATGAGAAGGCGGTCTCTGCAATAGTATCATTTCTGTTGGGACCTGAGCGAGCTGAAAAAATCAAGATATTTGCAGGAGATGTCGTTCCCCGTAAAAAGCCTGATCCGGCAATCTACTTATTGGCAGCAAGCACTCTTGGTATTGACCCTTCAAGGTGTGTTGTGGTGGAGGATAGTGCCATTGGTCTAGCTGCGGCCAAATCCGCCAGAATGAAGTGTATAGTGACAAAGAGCGGTTACACAGCAAATGAAGACTTTTTAAATGCAGATGCAGTTTTCGACTGCATTGGAGATCCCCCGGAGGTGCGTTTCGACTTGGAATTCTGTGGAAGACTTCTCAAGAAGCAACCTGTTAGCTAA 990 44.95 MALSIPFNYVFSAAQSSPVTPYFSRIKTAIVTDFRPHGRSLPTSSSSLFGTRLVTTKGQVWSIIRRLRNASNGAITCSSSSSSDLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVAWDVDLYGELLKIGGGKERMTSYFNKTGWPDKAPKDEDERKEFIASLHKRKTELFMALIEKKLLPLRPGVARLIDQALGKGIKVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLGIDPSRCVVVEDSAIGLAAAKSARMKCIVTKSGYTANEDFLNADAVFDCIGDPPEVRFDLEFCGRLLKKQPVS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1194003 1197024 - Conep19aG0019500.1 Cone19ag0189 458626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0189 329 SUPERFAMILY HAD-like 87 310 IPR036412 -
Cone19ag0189 329 Gene3D - 88 305 IPR023214 -
Cone19ag0189 329 Pfam haloacid dehalogenase-like hydrolase 88 279 - -
Cone19ag0189 329 Gene3D Putative phosphatase; domain 2 100 184 IPR023198 -
Cone19ag0189 329 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 85 312 - -
Cone19ag0189 329 FunFam HAD family hydrolase 180 302 - -
Cone19ag0189 329 NCBIfam HAD-IA family hydrolase 170 285 IPR006439 -
Cone19ag0189 329 SFLD phosphoglycolate phosphatase 85 312 - -
Cone19ag0189 329 CDD HAD_CbbY-like 88 288 - -
Cone19ag0189 329 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 62 316 IPR044999 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0189 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0189 Cone-Chr19:1194003 Cone5ag0080 Cone-Chr5:381882 9.91E-14 dispersed
Cone16ag0287 Cone-Chr16:3254695 Cone19ag0189 Cone-Chr19:1194003 2.28E-09 transposed
Cone3ag1441 Cone-Chr3:33143905 Cone19ag0189 Cone-Chr19:1194003 2.09E-11 transposed
Cone9ag1471 Cone-Chr9:10883082 Cone19ag0189 Cone-Chr19:1194003 3.58E-48 transposed
Cone13ag0201 Cone-Chr13:1251470 Cone19ag0189 Cone-Chr19:1194003 5.79E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33