Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0190 ATGCTCAGATTAATAACATTCCCTCCAATTTTCTCAACCTTATCGATCAATCATCGCTTTTACTCTGCCTTAACGCATGGCTCTCCACCTGTTCGACGAAATGCCTCACCCTCCACCACCACCAAAACCGGTGCTTCTGCCACCGCCGTTCCGGTGTACCAGCTCCCACCCACCTCCGCCTATGTTCACCTCCCTTTCTGCCGCAAACGCTGCCACTACTGTGACTTCCCCATCGTCGCTCTCGGAACCTCTTCTTCTCTTTCTTCTTCTTCCCCGACCCAAAACGATGGCGTAGACGATCCACGAATCGTGAACTACATACAATCACTCTGCAGAGAAATCGCCGCAACAAAACCGGAATCTGGAACCACCCTGCCTCTCCAAACCGTCTTCTTTGGAGGCGGAACGCCGTCTCTCGTTCCGCCAAGGTTAGTCTCCACGATCCTGAACGCTTTAAAAATGCAGTTTGAAGTTTCCATGGATGCGGAGATATCCATGGAAATGGATCCTGGAACGTTTGACGGTAAGAAGATGGAGGAGCTGGTCGAGATGGTGGGTGTGAATAGAGTTTCGTTAGGGGTTCAGGCGTTTCAGGAAGAATTGTTGAAGGCTTGTGGAAGAGCTCATGGGTTGAAGGAAGTGTATGATGGGATTGAGATTGTGAAGGCTTGTGATGGGGTTCGAAACTGGAGTTTGGATTTGATCTCTTCTCTGCCTCATCAGAGTTTTGAAATGTGGGAAGAGAGCTTGCGTCTTGCTGTTCAAGCTGAACCTACCCATGTCTCTGTCTACGATTTGCAGGTCGAACAAGGCACTAAATTTGGAAACTTGTACAATCCTGGAGTGTTTCCTCTACCGTCCGAGACACAGTCTGCTAGTTTCTACAAAATGGCTTCAAAGGCACTATCGGATGCAAACTACAACCATTACGAGATCAGCAGCTACTCGAAAACCGGATTTGAATGCAAACACAATCTGACTTACTGGGCCAACAAACCCTTCTATGCGTTCGGCCTAGGGGCAGCAAGTTATCTCAAGGGACTTAGATTCTCAAGACCTAAGAAAATGAAAGAGTACATGAACTATGTCCAAGACTTAGAAAACGGGGCTGTTACTTGCCATGGAAGCAACCTTGTGGATGCTAAAGACATGGCCATGGATGTTGTGATGTTGTCGTTAAGAACTTCTCAAGGGCTTGATTTGAAGTGTTTTGCAGAGGAATTTGGTGGGTCCCTTGTACTTGATCTTTGTAAGGTTTATAGAGAGTATGTGGAAAGTGGGCATGTGGTTTGCTTGGATGACAAGGAAAGAGTGGTGAGGGCGGATGAGTTTAATAACTTCTTGTTGTTGAAGGAAGATGATGAGATTGCGAAGATAGTACGTTATATTCGACTTAGTGATCCGGATGGTTTCTTGTTGTCTAATGAATTGATATCTCTTGCATTTGGGGCCATATCACCCTAA 1464 46.58 MLRLITFPPIFSTLSINHRFYSALTHGSPPVRRNASPSTTTKTGASATAVPVYQLPPTSAYVHLPFCRKRCHYCDFPIVALGTSSSLSSSSPTQNDGVDDPRIVNYIQSLCREIAATKPESGTTLPLQTVFFGGGTPSLVPPRLVSTILNALKMQFEVSMDAEISMEMDPGTFDGKKMEELVEMVGVNRVSLGVQAFQEELLKACGRAHGLKEVYDGIEIVKACDGVRNWSLDLISSLPHQSFEMWEESLRLAVQAEPTHVSVYDLQVEQGTKFGNLYNPGVFPLPSETQSASFYKMASKALSDANYNHYEISSYSKTGFECKHNLTYWANKPFYAFGLGAASYLKGLRFSRPKKMKEYMNYVQDLENGAVTCHGSNLVDAKDMAMDVVMLSLRTSQGLDLKCFAEEFGGSLVLDLCKVYREYVESGHVVCLDDKERVVRADEFNNFLLLKEDDEIAKIVRYIRLSDPDGFLLSNELISLAFGAISP 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1197647 1199274 - Conep19aG0019600.1 Cone19ag0190 458627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0190 487 SFLD anaerobic coproporphyrinogen-III oxidase like 57 431 - -
Cone19ag0190 487 Gene3D tm_1862 like domain 65 297 IPR023404 -
Cone19ag0190 487 PANTHER COPROPORPHYRINIGEN III OXIDASE 30 485 IPR034505 GO:0005737(PANTHER)|GO:0006779(PANTHER)|GO:0051539(PANTHER)
Cone19ag0190 487 Pfam Radical SAM superfamily 61 253 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone19ag0190 487 SUPERFAMILY Radical SAM enzymes 48 438 - -
Cone19ag0190 487 SMART MiaB 57 297 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone19ag0190 487 SFLD HemN-like, clustered with heat shock genes 57 431 IPR004559 GO:0004109(InterPro)|GO:0005737(InterPro)|GO:0006779(InterPro)|GO:0051539(InterPro)
Cone19ag0190 487 NCBIfam radical SAM family heme chaperone HemW 59 427 IPR004559 GO:0004109(InterPro)|GO:0005737(InterPro)|GO:0006779(InterPro)|GO:0051539(InterPro)
Cone19ag0190 487 ProSiteProfiles Radical SAM core domain profile. 52 305 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0190 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0202 Cone-Chr13:1255198 Cone19ag0190 Cone-Chr19:1197647 1.90E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g907 . . Bda06g00631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0202 Cone19ag0190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011201 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31