Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0195 ATGCATATCCTCATATACCCTCCACATTTCTTCACCTTCCCTAAAACCCTGAACCCAATCTCCTCCTCTTCCTCCTCTGCATTCCTTCAAGCTCATCTCCCATGGCGTCCTCTTCTCTCTCCGACCATTACTCTCCCCCGAAACTTCACCGCCAAATCCTTCAGCTCCGACGAATTCCCCGTCGACGAGTCTTTCCTCGAGAATTTCGGTCCCAAGGACAAAGAAACCGAGGATGAAGCGAGAAGAAGGAACTGGATCGAAAGAGGTTGGGCCCCATGGGAAGAAGTTCTCACTCCAGAAGGCGATTTTGCTCGGAAGAGCTTAAACGAAGGAGAGGAGGTCGCGCTTCAGTCGCCTGAGGCGATCGAAGCGTTCAAAATGCTGAGCCCTAAGTATAGGAAGAAGAAGATGGAGGATATGGGGTTGACCGAGGACGATTATTATAAGAAGCAGTTCGAGATTAAGGGGGAGATTCCCGAGAAGCTGGAGACGATGTGGTCGGGCCCACTGGTTGTCCAGGTTGTGCCGCCTAGAGATTGGCCCCCAGAGGGTTGGGAGGTTGATAGGGAGGAGCTGGAGTTTATTAGAGGAGCTCATAAGTTGCAGGCTGTGAGGGTGGATATGGAGGGGTTGGAGAGAGAAGTGGTAAAGAGTGAGCCTAATGATATTTGTTTGGATAGGTATAAGGTGTTTCTTAAGCAATATAATGAGTGGGTTGCGGCTAATAAGGATAGATTGGAGGAGGAGGCTTACAAGTACGACCAAGATTATCATCCTGGTAGGAGGAAAAGAGGCAAGGACTACAAAGAGGGAATGTATGAGCTGCCATTTTATTATCCAGGACAAATTTGTGAAGGAAAAGTGACTGCTCTGCATCTTTATCAAGGAGCATTTGTCGACATTGGAGGTGTATATGATGGGTGGGTCCCCATAAAGGGTAATGATTGGTATTGGATCCGGCATCACATAAAAGTTGGCATGTATGTCATGGTTGAGATTCTGGCAAAGCGAGATCCTTATCGGTTTCGGTTTCCTATTGAAATGCGTTTTGTTCATCCTAATATAGATCACCTTATCTTTAACAGATTTGATTTTCCGCCAATATTTCACCGGGATGACGACAATAATCCAGACGAGTTAAGGCGTGATTGTGGAAGACCTCCTATACCGAAAAAAGACCCAGGAGACAAACCAGAAGAAGAACCCTTGTTGTCAAACCACCCATATGTTGATAAGTTATGGCAGATACATGTTGCTGAGCAAATGATTTTGGACGATTTAGAGGTTAATCCTGAAAAATACAAAGACAAAAAGTTGTCAGAGTTAACTGATGATGAGGATTTCGATGAAGAAAATAGTGTTCAATATACCAAAGTTTATTATAAGAAAACCTTAGCTCCAAAAATGGTTCTGAAAACAAGTGTCAAAGAACTTGATCTAGTGGCAGCCTTTGCTGAGCGAGAGCATCACAGAAAACTAATGACAGAAGCACAAGAAAGAGGAGAAGAATACAAAATCACTAAACTGAGACGAAACATTGAAATGGATGAGTATGACCTTATACATTGGCGCCGTTCTTTTGAGGAAAGAGAAACATTGCTCAGAGATATCAGCTGCCGCCAAGCCCTTGGCCTGCCCTTGGAAGAACCAGGAAAATTTGTAGATTCAAGTTATTTTGGGAAGGAGCAGTACGACCCGACAAGTGCTCTATACCGTTATGACTATTGGGGCGAACCGAAGAATTCCGAGAAGAGCAAGCAGGAGCGAAAGACGGACGCTCACAACAAGTCTATAGTAGGAAAAGGGCATGTTTGGTATGAAATGTCTTATGAGGATGCTATTAAACAGAAGATGGAAAGAGAAGCCCGCGAAAAGGAGGAGGCAAAGCAAGAAGACGGGTCGGAGAGTAATGAAGACGAGGATGATGAGGATGACGACGATGACGACTTTGATTTCAGCATTTTACAGGACCCTGATATTAACGTATCGAGCCAGCCTCATGTAAATGGGACAGAATCTTCAAGAATCTCTGATGAGGGTATGTTTGAGGATTAG 2055 44.72 MHILIYPPHFFTFPKTLNPISSSSSSAFLQAHLPWRPLLSPTITLPRNFTAKSFSSDEFPVDESFLENFGPKDKETEDEARRRNWIERGWAPWEEVLTPEGDFARKSLNEGEEVALQSPEAIEAFKMLSPKYRKKKMEDMGLTEDDYYKKQFEIKGEIPEKLETMWSGPLVVQVVPPRDWPPEGWEVDREELEFIRGAHKLQAVRVDMEGLEREVVKSEPNDICLDRYKVFLKQYNEWVAANKDRLEEEAYKYDQDYHPGRRKRGKDYKEGMYELPFYYPGQICEGKVTALHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMYVMVEILAKRDPYRFRFPIEMRFVHPNIDHLIFNRFDFPPIFHRDDDNNPDELRRDCGRPPIPKKDPGDKPEEEPLLSNHPYVDKLWQIHVAEQMILDDLEVNPEKYKDKKLSELTDDEDFDEENSVQYTKVYYKKTLAPKMVLKTSVKELDLVAAFAEREHHRKLMTEAQERGEEYKITKLRRNIEMDEYDLIHWRRSFEERETLLRDISCRQALGLPLEEPGKFVDSSYFGKEQYDPTSALYRYDYWGEPKNSEKSKQERKTDAHNKSIVGKGHVWYEMSYEDAIKQKMEREAREKEEAKQEDGSESNEDEDDEDDDDDDFDFSILQDPDINVSSQPHVNGTESSRISDEGMFED 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1223324 1228632 + Conep19aG0020100.1 Cone19ag0195 458632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0195 684 MobiDBLite consensus disorder prediction 657 676 - -
Cone19ag0195 684 MobiDBLite consensus disorder prediction 374 402 - -
Cone19ag0195 684 Coils Coil 611 635 - -
Cone19ag0195 684 SUPERFAMILY Nucleic acid-binding proteins 277 336 IPR012340 -
Cone19ag0195 684 MobiDBLite consensus disorder prediction 633 654 - -
Cone19ag0195 684 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 43 672 IPR044967 GO:0000427(InterPro)|GO:0003723(InterPro)|GO:0009507(PANTHER)
Cone19ag0195 684 MobiDBLite consensus disorder prediction 617 632 - -
Cone19ag0195 684 ProSiteProfiles S1 domain profile. 281 349 IPR003029 GO:0003676(InterPro)
Cone19ag0195 684 MobiDBLite consensus disorder prediction 617 684 - -
Cone19ag0195 684 Gene3D - 278 349 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0195 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g156 . . Bda06g00739 . . . . Bma12g01073 . . Cma10g00074 . Car10g00064 . Sed08g0047 . . Bhi02g00547 Tan09g2351 Cmetu02g1227 . Hepe09g0066 . . Cla06g01727 Cam06g1917 Cec06g1967 Cco06g1971 Clacu06g1873 Cmu06g1815 Cre06g2630 . . . Cone19ag0195 . . . . . Blo15g00218 . . Bpe07g00880 . . . . Cmo10g00073 . . . . . . . . . . . . . . . . . . . . . Lsi06g01622 Csa01g00074 Chy02g02645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011208 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31