Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0197 ATGGCGGCAGGGAGAGATGATAAGCTGAGGAGGAGGGAGGTTTATAAATACACCAAAATAGAATATGAACATTCCTGGAAGGGTTCTCGTGATACTGGGGTTGTTCACCGGGATTATAGCTACAAGAAAAAGAATGGGAAAATATTTTTATCAGGTGAAATCAACTTGGACCCTGGTAAAAATGGCGCATATGGTAGGTCAGAAGAGCGGAAGTTGGTTAATTTACAAACCAGGAGCGGTGCTGATGAGACTTACAGCAAAGTTGGAGATCCAGAGAGCGAAGATCAAGTTCAGTTGCCTGCTGAGAAGAGAAGGAAGGTCTCCCCCAATTTGTTGGACAGAGTTGAAAAGGAAGTTAGAATTCAATGCAAGAACAGGATCACACCTGTTGCCACTCTGATTACTCCAACCAACGATGAAACACGTGGTCAAGAATTGAGTGTAGTTTCTTCTAGGAACCCTGTTCTTAAAAATCAAGTTAAGGGGTCTAGGAACCCTGTTCTTAAAAATCAAGTTAAGGGGCTGGAGTTTTCGTCAGATGAGCCAGTATCAGGAGTTGAGTATGCGGAGACTCCTCTACCATCTCAAGCAAGCTCGTTCTCTCCTATTTGTTCCAATTATTTTGAAGAAAATGGGCAAGAAAAAGATGATATTGAGGAGGACGGGGTCGTTCATACACGGGATATTGCTATGTCAAGGTGGGCATCTGATAGTGATCCTGCAGGAGATATATGTTCATCTGATGATGAAGAAACAGAAAAAAAGAGAAGGGATCCTCTTGATTTGGAACCTCCTAAACAAGTAACAGAGAGGTATTCAAGTCCCGAGTCTGGGGAATTCCAAAGGGAAGACTCTGATGGGGATAGGGTAACAGTATCTGGTAATGACAAAGGTAGCCTTGGGGAGGCAGACAGTGGGGATGTTTCTTCTGCAAATGATTATGATGATACCATCATGGTTGATGTCAATGAAAAACACCTTGATGGTCTTATTGTTAGTGAAGATGGTTCTGAAATCCAGGATAAGAATGACCTTGAAGAACCTATTCTACCAGCCCGGAAAAGTGTAAACATGCTACAGGAATGCAGAAGTGTGTTTGAATACGAAAAGGTCAACAAAATAAGTGAAGGTACATATGGTATCGTGTATAAAGCAAAGGATCTGAAGTCGGGAGAAGTAGTGGCACTAAAGAAGGTGAAGATGAATATAGATAGGGATGGATTCCCCTTGTCATCTTTGAGGGAAATAAACATTATGTCGTCCTTTGATCACCCTTCAATTGTAGATGTCAAGGAAGTTGTTATGGATGACCTTGATAGTGTTTTTATGGTTATGGAATACATGGAGTATGACCTCAAGAAGGCAATGGAAGTAAGGAAGCAGCCATTTAGTGTAAGTGAGGTTAAACTCATGATGATACAGTTGTTAGAGGGAGTCAAGTATCTTCATGATAATTGGGTCCTTCATAGGGATTTGAAGACTTCTAATCTTCTTTTGAACAAGGATGGAAATTTGAAAATATGTGATTTTGGATTGTCCCGCCAATATGGGAGTCCACTCAAACCATATACTCCTCTTGTTGTCACCATGTGGTACAGGTCACCTGAGCTTCTTTTAGGAACAAAGCAGTACTCAACAGCAATCGACATGTGGTCCGTGGGGTGCATAATGGCTGAAATGTTGACGAAGGAGCCTTTGTTTAGAGGGAAAACAGAAATCGATCAACTGGATAAGATTTTCAGAACTCTTGGCACACCAAGTGATAGCATTTGGCCCGGATTTTCCGAACTTCCGGGGGCTAAGTCCAAATTTGTACGACAACCGTATAATTTGCTGCGGAAGAAGTTTCCAGCCACATCTTTCACAGGATCGCCAGTCCTTTCTGATTCAGGATTTGATTTGTTGAACCGACTTCTAACATATAATCCCGAGAAGAGAGTTTCAGCGGAGGATGCTCTTAATCATTCCTGGTTTTGTGAAGTTCCCCTTCCCAAATCTGATATTAAGCCATTACATGGCTAA 2022 41.84 MAAGRDDKLRRREVYKYTKIEYEHSWKGSRDTGVVHRDYSYKKKNGKIFLSGEINLDPGKNGAYGRSEERKLVNLQTRSGADETYSKVGDPESEDQVQLPAEKRRKVSPNLLDRVEKEVRIQCKNRITPVATLITPTNDETRGQELSVVSSRNPVLKNQVKGSRNPVLKNQVKGLEFSSDEPVSGVEYAETPLPSQASSFSPICSNYFEENGQEKDDIEEDGVVHTRDIAMSRWASDSDPAGDICSSDDEETEKKRRDPLDLEPPKQVTERYSSPESGEFQREDSDGDRVTVSGNDKGSLGEADSGDVSSANDYDDTIMVDVNEKHLDGLIVSEDGSEIQDKNDLEEPILPARKSVNMLQECRSVFEYEKVNKISEGTYGIVYKAKDLKSGEVVALKKVKMNIDRDGFPLSSLREINIMSSFDHPSIVDVKEVVMDDLDSVFMVMEYMEYDLKKAMEVRKQPFSVSEVKLMMIQLLEGVKYLHDNWVLHRDLKTSNLLLNKDGNLKICDFGLSRQYGSPLKPYTPLVVTMWYRSPELLLGTKQYSTAIDMWSVGCIMAEMLTKEPLFRGKTEIDQLDKIFRTLGTPSDSIWPGFSELPGAKSKFVRQPYNLLRKKFPATSFTGSPVLSDSGFDLLNRLLTYNPEKRVSAEDALNHSWFCEVPLPKSDIKPLHG 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1240182 1244484 + Conep19aG0020300.1 Cone19ag0197 458634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0197 673 MobiDBLite consensus disorder prediction 78 101 - -
Cone19ag0197 673 Gene3D Phosphorylase Kinase; domain 1 352 449 - -
Cone19ag0197 673 FunFam Cyclin-dependent kinase G-2 450 670 - -
Cone19ag0197 673 Pfam Protein kinase domain 368 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0197 673 FunFam cyclin-dependent kinase G-2 isoform X1 353 449 - -
Cone19ag0197 673 SMART serkin_6 368 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0197 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0197 673 Gene3D Transferase(Phosphotransferase) domain 1 450 669 - -
Cone19ag0197 673 ProSiteProfiles Protein kinase domain profile. 368 658 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0197 673 PANTHER CELL DIVISION PROTEIN KINASE 367 658 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cone19ag0197 673 MobiDBLite consensus disorder prediction 85 101 - -
Cone19ag0197 673 MobiDBLite consensus disorder prediction 276 291 - -
Cone19ag0197 673 CDD STKc_CDC2L1 362 658 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0197 673 MobiDBLite consensus disorder prediction 247 265 - -
Cone19ag0197 673 SUPERFAMILY Protein kinase-like (PK-like) 363 664 IPR011009 -
Cone19ag0197 673 MobiDBLite consensus disorder prediction 231 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0197 K08818 - - cit:102610073 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0703 Cone-Chr12:6460617 Cone19ag0197 Cone-Chr19:1240182 3.77E-187 dispersed
Cone19ag0197 Cone-Chr19:1240182 Cone8ag0731 Cone-Chr8:7347584 1.02E-183 dispersed
Cone13ag0210 Cone-Chr13:1354774 Cone19ag0197 Cone-Chr19:1240182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0210 Cone19ag0197 . . . . . Blo15g00063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82369 None None None None Cone PK