Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0200 ATGGCGTCGCTGTATCTTCTCTACGAGTCTGCTTCCGGTTACGCGCTGTTTAATGCTCATGGTCTCGACGAGATCGGCCAGAACACTGAGGCTGTTCGGAGCTCCGTCTCCGATCTCAGCCGTTTCGGAAAGGTCGTCCAGCTCACTGCTTTTCTTCCTTTTGAGTCCGCTCTTGATGCTCTCAATCAGTGCAACTCGGTCTCCGAAGGCGTTATGACCGATGAATTGAGGAACTTTTTGGAGCTTAATCTCCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTACATTTTAGGGCTAGCAGAACCAAAGATTGGTTCGAGTATCTTTGAAGAGACTAAAATCCCTTGCCAGAGTAACGAGTTTGTTCTTGAGCTTCTTCGTGGTGTCAGACTACATTTTGATAGGTTTATCAAGGACTTGAAGCCTGGAGACTTGGAAAGAGCACAGCTTGGTCTTGGACACAGTTACAGCAGGGCGAAGGTTAAGTTCAATGTTAACAGAGTTGACAATATGGTGATTCAAGCAATCTTCCTTCTAGATACTCTTGACAAGGATGTCAATACCTTCTCCATGAGAGTCAGAGAGTGGTACTCATGGCATTTCCCCGAGTTGGTGAAGATTGTCAGTGATAACTATTTATATGCTAAAGTTTCAAAATTTATTGAGGACAAATCAAGGCTGTCTGAAGAACATATCCCTGGGCTCACAGAGATAATTGGTGATGAAGATAAGGCTAAGGAGATTGTTGAAGCTGCCAAGGCATCCATGGGGCAGGATTTATCGCCCATTGACTTGATTAATGTTCAGCAATTCGCCCAGAGGGTAATGGATCTGTCTGAGTACAGGAAGAAGCTATATGATTATCTAGTTACTAAAATGAATGACATTGCACCCAATTTGGCTTCCTTGATTGGTGAAGTTGTCGGGGCCCGTTTAATTTCTCACGCTGGTAGTCTCACAAACTTGGCCAAGTGCCCATCTTCCACCCTTCAAATTCTTGGTGCAGAGAAGGCACTCTTCAGGGCACTGAAAACCAAAGGAAACACACCCAAGTATGGTCTGATCTTTCACTCATCTTTCATTGGCCGAGCATCTGCTCGGAATAAAGGGCGGATGGCTCGCTATCTTGCAAACAAGTGCTCTATTGCATCTCGCATTGACTGCTTTGCAGAAACTGCTTCCACTGTTTTCGGGGAGAAACTCCGTGAACAAGTTGAGGAACGACTCGACTTCTATGACAAGGGAGTTGCACCTCGCAAAAACATTGATGTGATGAAATCTGCAATTGAAAGTGTACAAAACAAAGATGAGACAGAATTACCTACTGAAGCTTCCGGAAAGAAAAGCAAGAACAAGAAATCAAAAGCTGATCCGATGGCTATTGACAAACTTGCTGATGCTACAAATGGTGATGCCTCTGAGCACTTGAAATCCAAAATGAAGGAGAAGCGAAAACTGGATCAGATTCCGGAAAAACCAAGTGACATAAATGGTGTAGAGGAGGATGGAACAGCCAAGAAGAAGAAGAAGAAGAAGAGTAAAGAAGAAAATGGAGGAGATGTTGAAGCTCCTGCCACTGATGGTAAAAAGAAGAAGAAGAAGAAGTCAAAGGGTGAAGATGATGAGTAA 1629 44.01 MASLYLLYESASGYALFNAHGLDEIGQNTEAVRSSVSDLSRFGKVVQLTAFLPFESALDALNQCNSVSEGVMTDELRNFLELNLPKVKEGKKAKYILGLAEPKIGSSIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLERAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNTFSMRVREWYSWHFPELVKIVSDNYLYAKVSKFIEDKSRLSEEHIPGLTEIIGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLYDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAETASTVFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIESVQNKDETELPTEASGKKSKNKKSKADPMAIDKLADATNGDASEHLKSKMKEKRKLDQIPEKPSDINGVEEDGTAKKKKKKKSKEENGGDVEAPATDGKKKKKKKSKGEDDE 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1250617 1253505 - Conep19aG0020600.1 Cone19ag0200 458637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0200 542 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 535 IPR045056 GO:0030515(InterPro)|GO:0030515(PANTHER)|GO:0031428(PANTHER)|GO:0031428(InterPro)|GO:0032040(InterPro)|GO:0032040(PANTHER)
Cone19ag0200 542 MobiDBLite consensus disorder prediction 468 542 - -
Cone19ag0200 542 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cone19ag0200 542 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cone19ag0200 542 MobiDBLite consensus disorder prediction 433 460 - -
Cone19ag0200 542 SMART NOSIC_2 171 223 IPR012976 -
Cone19ag0200 542 Gene3D - 142 299 - -
Cone19ag0200 542 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cone19ag0200 542 MobiDBLite consensus disorder prediction 433 542 - -
Cone19ag0200 542 FunFam Nucleolar protein 56 141 299 - -
Cone19ag0200 542 FunFam Nucleolar protein 56 300 412 - -
Cone19ag0200 542 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cone19ag0200 542 Gene3D Nop domain 300 423 IPR042239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0200 K14564 - - vvi:100267928 842.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0709 Cone-Chr10:3570853 Cone19ag0200 Cone-Chr19:1250617 1.71E-106 dispersed
Cone19ag0200 Cone-Chr19:1250617 Cone3ag0728 Cone-Chr3:3721620 1.08E-107 dispersed
Cone13ag0211 Cone-Chr13:1365182 Cone19ag0200 Cone-Chr19:1250617 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45