Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0201 ATGCCGGATCCGATCCTACCACCGCCTAGATCCGCCACTAACCCCTTCGCCGACCCGCTCGATTCGCATCCGCTCTGGTTCAGGCCTGACCTCTTCCTCTCCCCCAACTTCGATTCAGAATCCTACATCTCCGATCTCCGAACCTTCGTGCCTTTCGACACGCTCCGAGCTGAGCTCCAGACTCACCTTTCGTCACTGAAACACGAGCTCATCGACTTGATTAACCGAGACTACAATGACTTCGTCAACCTGAGCACAAAGCTCGTCGACGTGGATGCGGCGGTTGTGCGAATGCGAGCTCCGTTGGTTGAGCTGAGAGAGAAGATCGAGCAGTTTAGGGGATCTGTGGAAGGTTCGCTTATGGCTTTGCAGAATGGATTGCGGCAGAGATCTGAAGCGGCATTGGCCAGAGAGGTCTTGGAATTGTTGCTTGATACATTTCACGTTGTATCTAAGGTTGAAAAACTGATCAAAGAGTTACCAAGTGTGCCTGCTGATTGGTCGAAGGGAGATACAAATTCTACAGATAAGAATTCATTGAGTAATGGTACTTCCGTAAAACGCATTGAGAATGGAACGCAATTCAGTGACACTCAAAGTATATTCCTGGAGAGAATTGCTAGTGAAATGAATCGGCTAAAGTTCTATTTTGCTCATGCACAGAACCTTCCTTTCATTGAAAACATGGAGAAGAGGATTCAGAGTGCCAACCTATTGCTAGATGCAAGTCTGGGTCATTGTTTTGTCGATGCACTTGGACATCGTCATGAGAAGGCTATAGCTAATTGCTTAAGGGCATATGCTGCCATTGATAAAACCCGGAGTGCGGAAGAGCTTTTCCGTTCAACTGTTGTGGCACCATTGATCCAAAAAATTATTCAACATGGACTATCAAGCATTGCTTCTGGGTCTTCTGGAGATGACCTTGAAGATGATTATAAGCAAATCAAGCAATATATTGATAGAGATTGTAAATTCTTACTAAAAATTTCTTCAGAAGCAAATTCTGGATTGCATGTATATGGCTTCTTGGCTAATTCAATCCTTAAAGAGGTTCTCTTGGCCATCCAAAAGGGCAAACCAGGTGCTTTTTCTCCAGGAAGACCTACAGGATTTTTAAAGAACTACAAAGCAAGCCTCGATTTCTTGGCCCATCTAGAAGGCTACTGTCCCTCAAGATCTGATGTTACTAAATTTCGAGCGGAGGCTATCTATATTGACTTCATGAAGCAATGGAATTTTGGTGTTTATTTTTCATTGAGGTTTCAGGAAATAGCGAGCAGTTTAGATTCTGTACTTACATCATCTAGCCTAATTCCTGTTCAGAACCTACCTTCTGATGAGGGACATTTCGAGAATTTAACATTAAAACAAAGTGTGGTTCTACGTGAGAGCCTAAGGACCTGCTGGAATGAGGATGTTCTCGTCATTTCATGCTCCGACAAATTTCTTCGTTTATCCTTGCAGATTATTTCAAGATACTCACATTGGTTGTCATCTGGTGTGGCTGCTCGCAAGGCGGGTAATACTGACTCTAATCCAGGGTGTGAGTGGGCTGTTGCAGCTGCCTCAGATGATTTTATATTTATTATCCATGACATAAATGCTCTAACCATTGAGGTTTGTGGTAACTTCTTGGGACATGTGCTCCGACATCTATCTACATGCTCCGCTGAGGTTCTTGATTTAGTAAAACAGAGCATTTTGCAGAGTGGAAAATCATTGAAAGATCTAATACCTCTAGTTATCAAAACTATCGTAGAGGCATTAGTGGAGAAGTCAGTTGAGGACTTACGACAACTGAAGGGAATAACTGCAACGTACAGAATGACCAATAAACCACTTCCTGTGAGGCATTCACCCTACGTGTCTGGGGTTCTTCGTCCCCTGAAGGCTTTTCTGGATGGAGAGCGAGCTACTAAGTATTTGACCAAGGAAACAAGGAATGATATTCTGCTTGGTGCTGCAACAGAAGTTACCAGTCGATACTACGAGTTAGCTGCTGATCTCGTTTCTGTGGCTAGGAAAACAGAGTCTTCACTCCAGAGAATCAGGCAGGGTGCACAAAGACGAGCTGGAGCAAGCTCGGAAATATCAGATCAGAATGTGTCCAATACGGACAAGATCTGTATGCAACTGTTCCTTGATATTCAGGAGTACGGTCGCAATCTTGCAGCCTTGGGGGTTGATGCAGGGAATATTCCGGCATACCACTCCTTGTGGCAGTGCGTTGCTCCAGTCGACAGGCAAGGAACAATCAAATTCTAA 2268 44.31 MPDPILPPPRSATNPFADPLDSHPLWFRPDLFLSPNFDSESYISDLRTFVPFDTLRAELQTHLSSLKHELIDLINRDYNDFVNLSTKLVDVDAAVVRMRAPLVELREKIEQFRGSVEGSLMALQNGLRQRSEAALAREVLELLLDTFHVVSKVEKLIKELPSVPADWSKGDTNSTDKNSLSNGTSVKRIENGTQFSDTQSIFLERIASEMNRLKFYFAHAQNLPFIENMEKRIQSANLLLDASLGHCFVDALGHRHEKAIANCLRAYAAIDKTRSAEELFRSTVVAPLIQKIIQHGLSSIASGSSGDDLEDDYKQIKQYIDRDCKFLLKISSEANSGLHVYGFLANSILKEVLLAIQKGKPGAFSPGRPTGFLKNYKASLDFLAHLEGYCPSRSDVTKFRAEAIYIDFMKQWNFGVYFSLRFQEIASSLDSVLTSSSLIPVQNLPSDEGHFENLTLKQSVVLRESLRTCWNEDVLVISCSDKFLRLSLQIISRYSHWLSSGVAARKAGNTDSNPGCEWAVAAASDDFIFIIHDINALTIEVCGNFLGHVLRHLSTCSAEVLDLVKQSILQSGKSLKDLIPLVIKTIVEALVEKSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKAFLDGERATKYLTKETRNDILLGAATEVTSRYYELAADLVSVARKTESSLQRIRQGAQRRAGASSEISDQNVSNTDKICMQLFLDIQEYGRNLAALGVDAGNIPAYHSLWQCVAPVDRQGTIKF 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1255365 1261146 - Conep19aG0020700.1 Cone19ag0201 458638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0201 755 Pfam COG complex component, COG2, C-terminal 410 717 IPR024603 -
Cone19ag0201 755 Pfam COG2 N-terminal 25 99 IPR024602 -
Cone19ag0201 755 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 14 750 IPR009316 GO:0006891(PANTHER)|GO:0007030(PANTHER)|GO:0007030(InterPro)|GO:0015031(InterPro)|GO:0016020(InterPro)|GO:0017119(PANTHER)
Cone19ag0201 755 Coils Coil 56 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0201 K20289 - - mdm:103437551 1144.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0212 Cone-Chr13:1368959 Cone19ag0201 Cone-Chr19:1255365 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g127 . . . . . . . . . . . . . . . Cpe20g00311 . . . . . . . . . . . . . . . . . Cone13ag0212 Cone19ag0201 . . . . . . . Bda14g01370 . Bpe15g00213 Bma03g01260 . . . . . . Car13g00648 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009590 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 0 1 1 1 1 2 4 1 33