Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0203 ATGGTGTCAACGAGGCGAAGTGGATCTCTCTCTGGAACCAATAGCAAAAGATCTCCGTCTTCAGATGATATCAAACCTCCCTTGCCTAAGCGTCTAAAGGTTGATAATGGTGGTGCGTCGGAGAAATTAACGGCGGCAGCGGGGAATTCGAAGGGATTGAGTACTCCGGCGGCAGAAGCGGTGAATCGTGGAGAACTGGAGGGTGGTGATTCTCCGATTGTTGTTGGAACTTCTGGAGGTGAAGGAGTCAGCTCTAAGAAGAGTGAGGATGCACAACCTGTAGTCGCTGTTTCGACGCCGATAGTTGAAGGGAATGTAACGGCGGCGGATAAGCCAAGGAGTTCATTTTCTTCGTGGAGTCTATTTCCTGCCGAGCAAAACATAAGTTTTGGTTCGTCAACGCCTTGGTGCAGGCTTCTGTCACAGTTTGGGCAGAATCCAGACGTTGTCATTTGTACATCAAATTTCACAATTGGGTCCAGCAGAAGTTGTAATTTCCCGATCAAGGATCATACTATTAGTGGGACCTTATGCAAGATCAAGCATTCACCGCGAGATGGCGGTGCTGTAGCTTTGCTAGAGAGTACAGGCAGCAAGGGATCAGTGGTGGTGAATGCAACAGCTGTCAAGAAGAATTCCAGCTGCGTGCTCAATTCGGGTGATGAGTTGGTTTTTGGTGTTGTGGGGAATCATGCATATATTTTTCAACAATTACCTGAGGCTCCTGTCAAAGGTTCAGAGGTTCAGAATGGCACTGGAAAGTTTCTTCAGTCTGAGAGGAGGACAGGTGATTCATCAGCAGTGGCTGGTGCTTCCATATTGGCATCTCTGTCAAGCCTTAGGCAAGACCTATCACGCTTGAAATCTCCAGCTCAGACCACCAGGAATTCTCATCAAGGTGTGGATGTCCCTTCTCATTCTGCTGTTTGTGATGGTATGGAAGTTGCCGTTGATGGCCTTGAAGCCAACTCAACTGCAGAAGTTGGGAGTGACAAAGCCCCAGGTGTGGAAACAACTCCTGACTACAACCTGGTCTCTGGTACAGAGGCAGCCAATGTTCTGGAAGAACGAAATGAGTGGATAGGGGATTTGCAGCCTACAACAACTTCAGGTGTCTCTTTGCATTGTGCAGTGTTAAAGGAAGACATTCGTTGTGGAATTCTAGATGGAAGAGACATAGAAGTTTCATTTGACAACTTCCCCTATTATTTGAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTCTGTCATACACCTGAAGCATAAAGAACATGCAAAGTATACCTCAGAGCTGACTACAGTGAACCCACGTATTTTACTTTCTGGTCCAGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAGGCACTTGCCAATTACTTTGGGGCTAAATTGCTCATATTTGATGGCCATTCATTTTTGGGTGGTTTATCCTCAAAGGAAGTGGAGCTGCTTAAGGATGGAGCTGGTGCAGATAAGTCGTGCAACTGTTCCAAGCAAGGTCCTCTGTCAAATGATTTGGCCAGGAGTACAGACCTATCAAATGGAGAAGAAGATACACCTAGCTCTTCTACCGGTCTCGAATCTCAACCGAAAATGGAGACGGACACAGTTCCTTCTTCTTCAGGGATATCTAAGAATTACTTGTTCAAAATTGGTGACAAAATAAAGTTTATCGGTTCAGCTTGTGGTGATTTGTACCCAACACCATTTTCTACAAGGGGCCCCTCAAATGGTGCTCGTGGGAAGGTTGTGCTAACCTTCGAAGAAAACTCTTTATCAAAAGTTGGTGTGAAGTTCGACAAACCCATAACTGATGGGGTTGATGTTGGGGGTCTTTGTGAGGGAGGCTATGGATTTTTCTGTAATGCTACTGATCTCCATTTGGAGAATTCAGGCATAGAAGAACTAGACAAGTTACTTATTGAGACATTGTTTGAGGTGATTCATACTGAGAGCAGAAATAATCCTTTCATTTTGTTCGTGAAAGATGCCGAGAAGTCTCTTGTAGGAAATTCAGATTCGTATTCGACTGTTAAAAACAGATTGGAAAAGCTCTCTGACAATGTCATTGTCATTGGTTGCCACACTCAAACTGACAATCGCAAAGAGAAGTCACATCCAGGTGGTCTGCTTTTCACAAAGTTTGGGAGCAATCAAACTGCTCTTCTTGACTTGGCTTTTCCGGATAGTTTTGGAAGACTGCATGACAGGGGGAAGGAAGTTCCCAAGGCAATGAAGTTGCTGGCAAAACTTTTCCCCAATAAAGTAATCATTCACCTTCCACAGGATGAGGCCCTTTTAGCATCCTGGAAGCAACAACTGGACCGAGATACTGAAACCCTCAAAATGAAGGGAAATCTGAATCTCCTGTGTACTGTCTTGAGTCGGAGTGGAAGAATGGAGTGTGAAGGACTTGAGTCTTTATACATCAAGGATCTAACACTTACAAATGAGAGTGCTGAGAAGGTAGTAGGATGGGCCTTGAGCCATCATCTAATGCAGATTCCTGAAGTTGATCCTGCTTCAAGGATTGTTTTGTCTAGTGAGAGCATCCAGTATGGGATCAGTATCCTGCACTCTATCCAGAACGAGTCCAAAAGCTTGAAAAAGTCGCTTAAGGATGTGGCCACGGAAAACGAATTTGAGAAAAGACTTTTAGCTGATGTAATTCCACCGAATGACATTGGAGTCACATTTGATGATATTGGGGCTCTTGAAAATGTGAAGGATACACTAAAGGAGTTAGTCATGCTTCCATTGCAAAGGCCTGAACTATTCTGCAAGGGGCAGTTAACAAAGCCATGTAAGGGCATACTCTTATTTGGTCCTCCTGGAACTGGTAAGACAATGCTTGCCAAGGCAGTAGCTACTGAAGCTGGTGCAAATTTCATCAATATTTCCATGTCGAGCATCACATCTAAGTGGTTTGGCGAGGGTGAAAAGTACGTAAAAGCTGTTTTCTCACTAGCCAGTAAGATAGCTCCTAGTGTCATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGCAGAGAAAATCCAGGGGAGCACGAGGCAATGCGAAAGATGAAAAATGAATTTATGGTCAACTGGGATGGATTACGAACAAAAGACACAGAACGAGTACTTGTACTTGCAGCTACGAACCGACCTTTTGACCTTGATGAGGCTGTTATCCGAAGGCTTCCTCGTAGATTGATGGTAAATTTGCCAGATTCCCCTAATAGGGCAAAAATATTAAAAGTTATACTTGCAAAGGAAGACTTGTCTCTTGATGTTGATTTTGATGAAATTGCAAGTATGACAGATGGATATTCTGGAAGTGATCTAAAGAATCTTTGTGTAACAGCTGCACACCGTCCAATTAAAGAGATATTGGAAAAGGAAAAGAAGGAGCGAGCTGCTGCTCTGGCTGAAGATAAACCAGTTCCAGCGCTTAGTGGAAGTGCTGATATAAGGCCTCTAAACATGGAGGATTTTAAAGAAGCTCATGAACGGGTCTGTGCGAGTGTTTCATCGGAGTCTGTTAACATGACCGAGCTACTACAATGGAACGAGCTCTATGGCGAAGGTGGTTCCAGAAGAAAGAAGGCCCTGAGCTACTTCATGTGA 3615 44.23 MVSTRRSGSLSGTNSKRSPSSDDIKPPLPKRLKVDNGGASEKLTAAAGNSKGLSTPAAEAVNRGELEGGDSPIVVGTSGGEGVSSKKSEDAQPVVAVSTPIVEGNVTAADKPRSSFSSWSLFPAEQNISFGSSTPWCRLLSQFGQNPDVVICTSNFTIGSSRSCNFPIKDHTISGTLCKIKHSPRDGGAVALLESTGSKGSVVVNATAVKKNSSCVLNSGDELVFGVVGNHAYIFQQLPEAPVKGSEVQNGTGKFLQSERRTGDSSAVAGASILASLSSLRQDLSRLKSPAQTTRNSHQGVDVPSHSAVCDGMEVAVDGLEANSTAEVGSDKAPGVETTPDYNLVSGTEAANVLEERNEWIGDLQPTTTSGVSLHCAVLKEDIRCGILDGRDIEVSFDNFPYYLSENTKNVLIAASVIHLKHKEHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDGHSFLGGLSSKEVELLKDGAGADKSCNCSKQGPLSNDLARSTDLSNGEEDTPSSSTGLESQPKMETDTVPSSSGISKNYLFKIGDKIKFIGSACGDLYPTPFSTRGPSNGARGKVVLTFEENSLSKVGVKFDKPITDGVDVGGLCEGGYGFFCNATDLHLENSGIEELDKLLIETLFEVIHTESRNNPFILFVKDAEKSLVGNSDSYSTVKNRLEKLSDNVIVIGCHTQTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKAMKLLAKLFPNKVIIHLPQDEALLASWKQQLDRDTETLKMKGNLNLLCTVLSRSGRMECEGLESLYIKDLTLTNESAEKVVGWALSHHLMQIPEVDPASRIVLSSESIQYGISILHSIQNESKSLKKSLKDVATENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSPNRAKILKVILAKEDLSLDVDFDEIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEDKPVPALSGSADIRPLNMEDFKEAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1277344 1294101 - Conep19aG0020900.1 Cone19ag0203 458640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0203 1204 MobiDBLite consensus disorder prediction 1 21 - -
Cone19ag0203 1204 SMART AAA_5 936 1073 IPR003593 GO:0016887(InterPro)
Cone19ag0203 1204 Gene3D - 1072 1166 - -
Cone19ag0203 1204 Gene3D - 135 242 - -
Cone19ag0203 1204 Pfam ATPase family associated with various cellular activities (AAA) 940 1070 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag0203 1204 CDD FHA 138 236 - -
Cone19ag0203 1204 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 145 1204 IPR051701 GO:0005741(PANTHER)
Cone19ag0203 1204 MobiDBLite consensus disorder prediction 503 541 - -
Cone19ag0203 1204 Gene3D - 898 1179 IPR027417 -
Cone19ag0203 1204 Pfam FHA domain 157 226 IPR000253 GO:0005515(InterPro)
Cone19ag0203 1204 CDD RecA-like_ATAD1 903 1069 - -
Cone19ag0203 1204 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 898 1074 - -
Cone19ag0203 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1181 IPR027417 -
Cone19ag0203 1204 MobiDBLite consensus disorder prediction 1 91 - -
Cone19ag0203 1204 ProSitePatterns AAA-protein family signature. 1043 1062 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag0203 1204 Pfam AAA+ lid domain 1093 1129 IPR041569 -
Cone19ag0203 1204 SUPERFAMILY SMAD/FHA domain 135 238 IPR008984 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0514 Cone-Chr17:2543702 Cone19ag0203 Cone-Chr19:1277344 0 dispersed
Cone19ag0203 Cone-Chr19:1277344 Cone20ag0940 Cone-Chr20:6747071 0 dispersed
Cone13ag0220 Cone-Chr13:1410552 Cone19ag0203 Cone-Chr19:1277344 0 wgd
Cone16ag0990 Cone-Chr16:9745441 Cone19ag0203 Cone-Chr19:1277344 1.63E-63 wgd
Cone16ag0024 Cone-Chr16:161078 Cone19ag0203 Cone-Chr19:1277344 0 wgd
Cone19ag0203 Cone-Chr19:1277344 Cone2ag0968 Cone-Chr2:35213306 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53