Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0204 ATGGCGTTAAACAACAGTAATAACAGTAACAATGTGGTGAGGAATATGGGAGCTCCATTACATTTTGGAAACACAGGGATGATTTCACAGTCTATAGCAAGTACCAACCATCAAACCCATCTCTTGTCTCAATCACAACCTCAAACACAGGCTCGTGCCCATTTTCCCGGTCATTTTCAGCTTTCTGGGCCTCAGAATCATTCCATGACCCCGCCCAAATTTCAAGCCCAAGCCCAGTCCCTTGCTCAGCTGCATGGAGCTAATAGTGGTAATGTTTCTGGACCCTTACCTTCTTCTGTCTCAACACCGGGCAGTGGAAGTGCCAAGAGAGCTAGTCAGAAGCCTCATTCTCGGCCTTTAGGAGGATCTTCTAATTCTAACACAAGTTCTCCTTTTAAGACCATGGAAGTAGCCCCTGCACCTCGGAGAAAGAAACAGATGCTATCTGACAAGCAAATACCTGATAAAGTGGCTGCTCTTTTGCCAGAATCTGCTCTATATACTCAACTGCTTGAACTCGAGGCTCGGGTGGATTCTGCTTTAGCAAGGAAGAAGATTGATATTCAAGAATCTCTTAAAAAACCTTCCCATGTTCAGAAGACGCTTAGAATTTATGTCTTCAATACATTTTCAAACCAGGTTCAATCAAGTGATTGTGATGACAAGAATACTGAACCCCCATCTGAACCCCCATCTTGGTCACTTAAGATCGTTGGGAGAATATTGGAAGATGGAAAAGACCCTGTTCTTACTGACACAATGCAGAAATCAAGCACTTCATACCCAAAATTCTCGTCTTTCTTCAAGAAAATTACTGTGTACTTGGACCCTAATCTATATGCAGATAACCATGTAATTCTCTGGGAGAGTGCCCGATCCTCTGCTTTTCATGAAGGGTTTGAGGTGAAGAGAAAAGGCAGCAAGGAATTCACTGCAATAATGAGACTAGAAATGAATCATGTTCAAGAGAAGTTAATGCTTTCGCCAGCACTATCTGAAGTTCTTGGGATTCAGATGGATACCCGTGCAAGAATTATAGCTGCAATTTGGCATTACGTGAAGGTTAAAAAGTTGCAGAACCCAAATGACCCTTCCTTCTTTGTGTGTGATCCTAGCCTTCAGAAAGTTTTTGGGGAAGAGAGGATGAAGTTTTCAATGGTATCCCAAAAGATATCACACCATTTATCTCCACCTCAACCCATACATTTAGAGCATAAGATTAAGCTTTCAGGAAATTCTCCTGTTGGAACTACTTGTTATGATGTCCTAGTTGATGTGCCATTTCCCTCAGAAAAGGAAATGTCGGCATTTTTGGCGAATACTGAGAAGCACAAAGAAATTGATGCTTGTGATGAATTAATTTCCGCATCTATAAAGAAGATCCAGGAGCATCACAGAAGAAGAGCATTCTTTCTTGGATTTAGTCAGTGTCCGGCTGAGTTTGTCAATACCTTGATTGCTTCTCAAAGTAAGGATCTAAATCTTGCTGTTGGAGATGCCAGCAAGAATGCAGAGAAAGAATGCTGCTCTGATTTCTACAATCAATCATGGGTTGAGGATGCCGTTATTCGATACCTGAACCGGAAATCTGCTGGAAATGATCCTCCTGGAAGTACATAA 1620 41.91 MALNNSNNSNNVVRNMGAPLHFGNTGMISQSIASTNHQTHLLSQSQPQTQARAHFPGHFQLSGPQNHSMTPPKFQAQAQSLAQLHGANSGNVSGPLPSSVSTPGSGSAKRASQKPHSRPLGGSSNSNTSSPFKTMEVAPAPRRKKQMLSDKQIPDKVAALLPESALYTQLLELEARVDSALARKKIDIQESLKKPSHVQKTLRIYVFNTFSNQVQSSDCDDKNTEPPSEPPSWSLKIVGRILEDGKDPVLTDTMQKSSTSYPKFSSFFKKITVYLDPNLYADNHVILWESARSSAFHEGFEVKRKGSKEFTAIMRLEMNHVQEKLMLSPALSEVLGIQMDTRARIIAAIWHYVKVKKLQNPNDPSFFVCDPSLQKVFGEERMKFSMVSQKISHHLSPPQPIHLEHKIKLSGNSPVGTTCYDVLVDVPFPSEKEMSAFLANTEKHKEIDACDELISASIKKIQEHHRRRAFFLGFSQCPAEFVNTLIASQSKDLNLAVGDASKNAEKECCSDFYNQSWVEDAVIRYLNRKSAGNDPPGST 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1294983 1297900 + Conep19aG0021000.1 Cone19ag0204 458641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0204 539 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 141 527 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0016514(PANTHER)
Cone19ag0204 539 ProSiteProfiles SWIB/MDM2 domain profile. 320 397 IPR003121 -
Cone19ag0204 539 CDD SWIB_like 327 395 - -
Cone19ag0204 539 Pfam SWIB/MDM2 domain 324 395 IPR003121 -
Cone19ag0204 539 SUPERFAMILY SWIB/MDM2 domain 315 405 IPR036885 -
Cone19ag0204 539 SMART swib_2 321 400 IPR019835 -
Cone19ag0204 539 MobiDBLite consensus disorder prediction 86 150 - -
Cone19ag0204 539 MobiDBLite consensus disorder prediction 86 134 - -
Cone19ag0204 539 Gene3D SWIB/MDM2 domain 317 402 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0204 K11650 - - mdm:103404188 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0218 Cone-Chr13:1405226 Cone19ag0204 Cone-Chr19:1294983 7.49E-90 transposed
Cone11ag0056 Cone-Chr11:242912 Cone19ag0204 Cone-Chr19:1294983 3.67E-207 wgd
Cone13ag0217 Cone-Chr13:1403386 Cone19ag0204 Cone-Chr19:1294983 1.43E-212 wgd
Cone18ag1426 Cone-Chr18:9650087 Cone19ag0204 Cone-Chr19:1294983 2.42E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g121 . . . . . . . Bma12g01080 . . . Cma11g00039 . Car11g00035 . . Cpe04g01610 . . . . . . . . . . . . . . . . . Cone19ag0204 . . . . . . . . . . . . . . Cmo11g00040 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001873 2 3 1 1 2 2 3 1 2 2 2 1 3 2 1 3 1 5 3 2 2 2 1 3 3 1 2 5 3 2 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45278 PF03791 KNOX2 5.60E-22 No_clan Cone TR