Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0213 ATGGAGAACAACCAGCAAGCCCAATCCTCCTCTTACCCTCCCGCCCAAGGCGTCGCTCCTCCCCCTCCGCCATTCCACCACCTCCTTCAGCAACAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAATCCGTCAACGATTTCAAGAACCACCAGCTCCCCCTCGCTCGAATCAAGAAGATCATGAAAGCCGATGAAGACGTGCGGATGATCTCGGCCGAAGCTCCGATCCTGTTCGCTAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACCATTAGGTCATGGCTCCACGCCGAGGAGAACAAGAGGCGAACCTTGCAGAAGAACGATATAGCGGCGGCGATTACGAGGACTGATATCTTTGATTTTTTGGTTGATATTGTGCCGAGAGATGAGATCAAGGATGAGGCTGGACTAGGGGGGATTGTAGGGGCTACGGCCAGTGGAGTTCCGTACTATTACCCGCCGATGGGCCAGCCTGCCGGAGCTCCGGGAGGTATGATGATCGGACGTCCGGCGGTTGATCCGACTGGTGTGTATGTGCAACCTCCGTCTCAGGCTTGGCAGTCTGTATGGCAGACGGGGGCTGAAGATGGGTCGTATGGGAGTGGAGGGAGCACTGGTCAGGGCAATCTTGATGGCCAAAGTTAG 666 56.16 MENNQQAQSSSYPPAQGVAPPPPPFHHLLQQQQQQLQMFWSYQRQEIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGIVGATASGVPYYYPPMGQPAGAPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTGAEDGSYGSGGSTGQGNLDGQS 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1343629 1346444 - Conep19aG0021900.1 Cone19ag0213 458650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0213 221 MobiDBLite consensus disorder prediction 197 221 - -
Cone19ag0213 221 SUPERFAMILY Histone-fold 23 129 IPR009072 GO:0046982(InterPro)
Cone19ag0213 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 141 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone19ag0213 221 Gene3D Histone, subunit A 25 135 IPR009072 GO:0046982(InterPro)
Cone19ag0213 221 FunFam Nuclear transcription factor Y subunit gamma 26 135 - -
Cone19ag0213 221 Pfam Core histone H2A/H2B/H3/H4 32 120 IPR007125 GO:0003677(InterPro)
Cone19ag0213 221 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0213 Cone-Chr19:1343629 Cone3ag1500 Cone-Chr3:33585649 4.06E-69 dispersed
Cone6ag0767 Cone-Chr6:3911492 Cone19ag0213 Cone-Chr19:1343629 1.00E-29 transposed
Cone13ag0228 Cone-Chr13:1485636 Cone19ag0213 Cone-Chr19:1343629 5.08E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45279 PF01179 Cu_amine_oxid 1.50E-156 CL0103 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0213 - - - 0.0