Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0221 ATGGACAACTCGCAACCTGACCCATCTTCTGATCCGATTCGAGACGACGAACCGGAGCTCGATCTTTACACCATTCCAAGTCAATCTCGTTGGTTTCTTTGGGACCAAATCCATGAGACTGAGAAATTAGCTTTGAAGGAGTTTTTTGACCGAAGTTCTGTTACAAGAACTCCGAAAATATACAAAGAATACAGAGATTTCATGATAAACAAGTACAGAGAAGAGCCTTTGAGGAAGCTTACGTTCACTGAAATTCGAAAGTTTCTAGTTGGAGATGTTAATTTGCTTCGCAAGGTATTTCTTTTCTTGGAGAAGTCAGGTTTGATAAATTTTGGTGCATCTTTGGGTGATGATAAGTCGGTGGAGGATGGAGAAAGCAGTAAAGTTAGGATTGAGGAAGCAGTTCCCAATGGTGTTCGGGTTGGTGCAGGGCCAAATTCTGTGAAACCTATTTTAGCTTCACTTACTGTGGGAGATAATGGTGGTGTTGCTGAAGGTGTACCTAAATTGCCTCCTCTTGCATCATATTCAGATGTTTTCAGCGATTTGATTAAGAAGAAGAAGGGCTTGCTTTGTGGGAGTTGTGGTGACCATTGTCGTTCTGAATATTATGAACACTCAAAGGGCGAATATGTACTTTGTGTTAATTGTTTTAAAAGTAGAAACTATGGGGAGGAGAAATCTATGGAAGATTTTAAGTTGAGTGAGGGAAATGAAAAAATTGGTAGTCAGGGCACCATTTGGACTGACGCAGAAACTCTACTTCTTTTAGAATCTGTTTTGAAGCATGGAGATGACTGGGAGCTTGTTGCTCATACTGTACAAACCAAGAGTAAATTTGATTGTATATTAAGGCTTATCGAGCTGCCTTTTGGGGAGTTTATGTTAGGATCTATCTATCAAAGGGATAATTTTCATGGCACGAATCATAAGATTGATGGTGCAAACCAAGCGCCACCGCCTTCAGCCGATCATCAGGAAGATGTCAAAACAGAGGATCAATTTCATGAGAAACCAAACGAGAATAGAGATATTGAGCACCAAGGTCCTCTTAAAAGGCAACGGGTAGAAACTATTTCCAATGCTAGTAGTTCACTAATGAAGCAGGTAGCTCTAATATCAGCCAAGGTGGGGCCACATGTCATGGCCGCAGCCGCTAATGCTGCTGTTACAGCAATTGGTGAAGAAAACTTATATTCAGAGGACATATTCAAGGGTCAAGATGGGTCTCTAAGTAATGGTCTATGGTCCTCTTCTACAAATTATGAAACGGAGAGAGACCAATGTGTTGAAGACTCGGAGATGAAGGAAAGGCATACCCAATCAGGAAGCGAGGAAACGTCTCTAAGCCATGATGTACCTATAATGTTACGAATTAGAGCTGCCATTGCAACTGCTCTTGGAGGAGCAGCTGCGCATTCCAAGATGTTAGCTGATCAAGAAGAGAGAGAAATCGAACATTTGGTAGCAACTGTCATTGAGACACAGATGAAGAAGCTGCAGTACAAAATGAAGTATATTGAGGATCTCGAGCAAATTATGGAGAAAGAGTATAGTGAAATGGAGGAGCTAGAAGATTCTCTATTATCGGATCGGATTGATGTCTTGCAAACGGCCTTTCATCTGGGTGTACCGAGATGGAGGGGTCATTCTTCTGTAATGAGATCTTAA 1671 41.41 MDNSQPDPSSDPIRDDEPELDLYTIPSQSRWFLWDQIHETEKLALKEFFDRSSVTRTPKIYKEYRDFMINKYREEPLRKLTFTEIRKFLVGDVNLLRKVFLFLEKSGLINFGASLGDDKSVEDGESSKVRIEEAVPNGVRVGAGPNSVKPILASLTVGDNGGVAEGVPKLPPLASYSDVFSDLIKKKKGLLCGSCGDHCRSEYYEHSKGEYVLCVNCFKSRNYGEEKSMEDFKLSEGNEKIGSQGTIWTDAETLLLLESVLKHGDDWELVAHTVQTKSKFDCILRLIELPFGEFMLGSIYQRDNFHGTNHKIDGANQAPPPSADHQEDVKTEDQFHEKPNENRDIEHQGPLKRQRVETISNASSSLMKQVALISAKVGPHVMAAAANAAVTAIGEENLYSEDIFKGQDGSLSNGLWSSSTNYETERDQCVEDSEMKERHTQSGSEETSLSHDVPIMLRIRAAIATALGGAAAHSKMLADQEEREIEHLVATVIETQMKKLQYKMKYIEDLEQIMEKEYSEMEELEDSLLSDRIDVLQTAFHLGVPRWRGHSSVMRS 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1395688 1399751 - Conep19aG0022700.1 Cone19ag0221 458658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0221 556 ProSiteProfiles SWIRM domain profile. 23 120 IPR007526 GO:0005515(InterPro)
Cone19ag0221 556 Gene3D - 29 115 IPR036388 -
Cone19ag0221 556 PANTHER SWI/SNF COMPLEX-RELATED 42 539 - -
Cone19ag0221 556 Gene3D - 243 292 - -
Cone19ag0221 556 MobiDBLite consensus disorder prediction 325 352 - -
Cone19ag0221 556 FunFam SWI/SNF complex subunit SMARCC2 isoform c 29 117 - -
Cone19ag0221 556 Pfam SWIRM-associated region 1 465 538 IPR032451 -
Cone19ag0221 556 MobiDBLite consensus disorder prediction 414 449 - -
Cone19ag0221 556 SUPERFAMILY Homeodomain-like 243 301 IPR009057 -
Cone19ag0221 556 ProSiteProfiles SANT domain profile. 243 294 IPR017884 -
Cone19ag0221 556 SMART sant 244 292 IPR001005 -
Cone19ag0221 556 MobiDBLite consensus disorder prediction 308 352 - -
Cone19ag0221 556 SUPERFAMILY Homeodomain-like 21 113 IPR009057 -
Cone19ag0221 556 MobiDBLite consensus disorder prediction 425 445 - -
Cone19ag0221 556 Coils Coil 507 527 - -
Cone19ag0221 556 Pfam SWIRM domain 34 111 IPR007526 GO:0005515(InterPro)
Cone19ag0221 556 CDD SANT 248 285 IPR001005 -
Cone19ag0221 556 Pfam Myb-like DNA-binding domain 248 287 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0221 K11649 - - mdm:103437517 579.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1479 Cone-Chr17:9978302 Cone19ag0221 Cone-Chr19:1395688 1.77E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33