Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0222 ATGGCGTCGGAGACGTTAGAGGACAAGAAGCCTGAAGAGGAAGCTCCTGTGGAGGAGAAAAAGGAGCTGAAAGAAGAAGAGGGAGGGAAAGAAGAAGGAGAAGAAGGACGAGATAAGGAGGGAAAAGAGAAAGGAGCTGAAGGAGGAGGAGGACGAGCAGTGGAGGAAAAAGAGGAGCGTGCTGAGGAGAAGGACGAAGAGAAAGGGAGGGTGGAGCCATCTGTGAAAGAAGGTGATGGTGATGATGGTGGACCTGAGGAGAAAAATGCTGAAGAGAAAGGTGAAGAGGTTGAGGAAGAGGAGGAGGAAGTGGAGGATGAATTGAGGGACAAGAGTGGGAGTGGAAAATCAGGGAAAGAAGAACCAGTCACGCCAGTAAGTGAAAGGCCGACAAGGGAGAGGAAGATGGTTGAGCGGTTCTCGGTTCCGTCGCCTGCTAGGTCCGGGAAGTCTTCGGCAAGTAAAGGAGTATCGATTGAGAAGGGTCGTGGTACTCAGCTAAAGGACATTCCAAATGTGGCTTTCAAACTATCAAAGAGGAAAGCTGATGAGAATCTGCAAATTCTTCACACAATTCTTTTTGGAAAGAAAGCAAAGGTACACAGTATGAAGAGAAACATAAGCCAGTTTTCAGGTTATGTTTGGGTTGAGAGTGAGCAAGAAAAACAAAGGGCAAAAATAAAGGAAAAGATTGACAAGTGTGTGAAAGAAAAATTGGTGGACTTTTGTGATGTGCTGAATATCCCAGTAAATAAGGCTGGTGTGAAGAAGGAAGAACTCTCTGCAAAGTTATTGGAGTTCCTGGAATCACCACATCCTACCACTGATATTTTACTTGCTGATAAGGAGCAGAAAAGTCAAAAGCGTAAGAGGAAGGTCACTCCAAACAAAACTGATGGCTCTGGGGAAGAACATGTGGAAACACAAGAAAAGAAGCAAAAGTCTGAATCTGGAAAAAAGAGGAAGCATGTGTCTGAAGTTAAGGAAGATGATGATGATCATAAAGTTGAATCTTCAGAGGAAAAAGATGGGTCTCGTGAAGACGGTGACACTGACATGGTGCAGAAAGAAGAAAGTGATCATGATGAGGTTAAAGATGTGGAAGAACGAAAATCAACAGAGCAAGTGTCAAGTCCTAAGGCTTCTTCTCGAAAGAAGGAAAATAAGGCTTCGACGGCTAAATCTGGGGAGAAATTTTCATCTTCCAAAAAGGGTCCTGGAAAGCCTACTAAAGGAGCTGCAAGATCAACAGGAAAATCATCTATTTCAGCTTCTAAGAAAAGTGAAACAAAAGAGACTTCTGGTTCACCATCCAAGTCCTCTAAATCTAAAAAGAATAAGGTTGAGGAAACCAAGGTAAATAAGGAGAAGTCTGCGTCCAAAAAACAGTCCAGCAAGTCCTTTAAGGTTTTAGCCAAAGAGCAAGGAAAAGGCAAAAAGAGCAAGAAGGCCAAGGTGGAACCAACCAGAGATGAGATGCATGCAGTAGTAGTTGATATTCTTAAAGAAGTGGATTTCAACACTGCTACGTTATCAGACATTCTTAGGCAACTTGGTGCGCACTTTGATGTGGATTTGATGCATAGAAAAACAGAGGTCAAGGACATAATAACTGATGTGATAAATAACATGAGTGATGAGGAAGAAGAGGAAGCCGAAGAAAATGTGGGGCCCCATGAAGATGATACGGATGAGGATGAGGATGGAGACAAAGACGACGACAACGATGATTAG 1734 43.31 MASETLEDKKPEEEAPVEEKKELKEEEGGKEEGEEGRDKEGKEKGAEGGGGRAVEEKEERAEEKDEEKGRVEPSVKEGDGDDGGPEEKNAEEKGEEVEEEEEEVEDELRDKSGSGKSGKEEPVTPVSERPTRERKMVERFSVPSPARSGKSSASKGVSIEKGRGTQLKDIPNVAFKLSKRKADENLQILHTILFGKKAKVHSMKRNISQFSGYVWVESEQEKQRAKIKEKIDKCVKEKLVDFCDVLNIPVNKAGVKKEELSAKLLEFLESPHPTTDILLADKEQKSQKRKRKVTPNKTDGSGEEHVETQEKKQKSESGKKRKHVSEVKEDDDDHKVESSEEKDGSREDGDTDMVQKEESDHDEVKDVEERKSTEQVSSPKASSRKKENKASTAKSGEKFSSSKKGPGKPTKGAARSTGKSSISASKKSETKETSGSPSKSSKSKKNKVEETKVNKEKSASKKQSSKSFKVLAKEQGKGKKSKKAKVEPTRDEMHAVVVDILKEVDFNTATLSDILRQLGAHFDVDLMHRKTEVKDIITDVINNMSDEEEEEAEENVGPHEDDTDEDEDGDKDDDNDD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1406799 1412111 + Conep19aG0022800.1 Cone19ag0222 458659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0222 577 Coils Coil 87 110 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 276 393 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 414 441 - -
Cone19ag0222 577 PANTHER DEK PROTEIN 3 554 IPR044198 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0042393(PANTHER)|GO:2000779(PANTHER)
Cone19ag0222 577 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 487 542 IPR014876 -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 145 159 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 92 107 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 276 491 - -
Cone19ag0222 577 SUPERFAMILY DEK C-terminal domain 481 542 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 472 491 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 542 577 - -
Cone19ag0222 577 Gene3D - 479 543 - -
Cone19ag0222 577 FunFam DEK domain-containing chromatin associated protein 479 543 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 1 91 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 108 140 - -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 442 463 - -
Cone19ag0222 577 Pfam DEK C terminal domain 488 540 IPR014876 -
Cone19ag0222 577 MobiDBLite consensus disorder prediction 1 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0222 K17046 - - mdm:114820997 467.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1216 Cone-Chr14:9898688 Cone19ag0222 Cone-Chr19:1406799 3.60E-37 dispersed
Cone15ag1237 Cone-Chr15:9784110 Cone19ag0222 Cone-Chr19:1406799 4.86E-39 dispersed
Cone13ag0236 Cone-Chr13:1549079 Cone19ag0222 Cone-Chr19:1406799 8.43E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34