Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0228 ATGGGGTGCCTTATCAGCACACGAGCTACTGGAGATCGCCGGATCACCGCCGGAGCTGTGAATCGTCGCCGTAACATAGAGGATTCTTCTGGTTCCAGAGATTCTGGCGATGTTGGGGTTAAGAAGGAGGTGATAGAAAATGAGAGGCAGCAGAGGAGCGGGAAAGCAGGGGATATTCCGGCGGAACTGCGCCGGAAAGCCAGGCAGGATCCTTGCTCGAGGAATGAGCAAGGTTGGCCTTCCTGGCTGTTGGCGGTTGCTGGCGATGTCATCCAAGGCTGGACTCCCCGGCGAGCTAACACCTTCGAGAAGCTTGCCAAGGGAACTTATAGCAATGTGTATAAAGCTAGGGACCTTGTCACTGGAAAAGTTGTTGCGTTGAAGAAGGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAATTTATGGCTAGAGAGATTCTTGTGCTCAGACGACTTGATCATCCCAATATTGTTAAGCTTGAAGGTCTTGTTACTTCTAGAATGTCTTGTAGTCTTTACCTAGTTTTCGAGTATATGGAACATGATCTATCTGGCCTTTCTGCTGGCCAAGGCGTCAAGTTCACTGAGCCTCAGGTCAAATGCTTCATGAAGCAACTATTGTCTGGGCTTGAGCATTGCCACAAACAAGGTGTCTTGCACCGAGATATAAAGGGCTCCAATCTGCTAATTGACAATGAAGGAATTCTTAAAATAGCTGATTTTGGATTAGCTACTTTTTATGATCCTGCACAAAGACAGCCCATGACAAGTCGAGTCGTCACCCTTTGGTACCGTCCCCCTGAACTTCTTCTTGGGGCTACGTTATATGATATTGCTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGTTGCTTGCTGGAAAGCCAATTATGCCTGGTAGGACAGAGGTTGAACAACTGCATAAGATATTTAAATTATGTGGCTCCCCATCTGATGAATACTGGAAGAAATACAAATTACCAAATGCCATGCTTTTTAGACCGCAACAGCCATACAAGCGCCGCATAGCAGAAACATTCAAGGACTTTCCATCTTCTTCTCTAGATCTGGTTGAAACTCTTCTTTCGATAGAGCCTGCTCAGCGGGGCACTGCTACTACTGCTTTGAATAGTGAATTTTTTACAACCGAGCCTTATGCTTGTGAACCATCGAGTTTACCCAAGTATCCTCCTAGCAAAGAAATTGATGTAAAATTAAGAGATGAAGAAGCAAGAAGGCAAAAGGGTCTAAGTGGAAAATCCACGGCCCTTGATGGTACAAGGAGAGGAAGAGCTCGTGATCGGCTTGGTCGGGCAATTCCAGCTCCAGAAGCCAATGCAGAGAATCAATCAAACCTAGATCGATGGAGAGTAGTGACACAAGCAAACGCAAAGAGCAAGAGCGAGAAATTCCCACCACCTCATCAAGATGGAGCTGTCGGACACCCACAAGATAAATTACATCCGGCCCCAGTATCTTTTGGGGCCAACGATACTTCTTTCAGCTCCTCGTTTTTTGATTCACAAACCGGATCTGTTAAAAGCATGGGAGCTTCTGTGGGGCCGTCATCACGTAGAGGGAAAACTAATAGAGATGATAATCCTCGGACTGTGGGCCCATCTCAGAAATTCATCCACGCATTGAAGCCTTCAATAGGGCTATCCATGAATCTGTTATTTAAGGGTAAGTAA 1698 46.17 MGCLISTRATGDRRITAGAVNRRRNIEDSSGSRDSGDVGVKKEVIENERQQRSGKAGDIPAELRRKARQDPCSRNEQGWPSWLLAVAGDVIQGWTPRRANTFEKLAKGTYSNVYKARDLVTGKVVALKKVRFDNLEPESVKFMAREILVLRRLDHPNIVKLEGLVTSRMSCSLYLVFEYMEHDLSGLSAGQGVKFTEPQVKCFMKQLLSGLEHCHKQGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPAQRQPMTSRVVTLWYRPPELLLGATLYDIAIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKYKLPNAMLFRPQQPYKRRIAETFKDFPSSSLDLVETLLSIEPAQRGTATTALNSEFFTTEPYACEPSSLPKYPPSKEIDVKLRDEEARRQKGLSGKSTALDGTRRGRARDRLGRAIPAPEANAENQSNLDRWRVVTQANAKSKSEKFPPPHQDGAVGHPQDKLHPAPVSFGANDTSFSSSFFDSQTGSVKSMGASVGPSSRRGKTNRDDNPRTVGPSQKFIHALKPSIGLSMNLLFKGK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1478009 1482274 - Conep19aG0023500.1 Cone19ag0228 458665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0228 565 MobiDBLite consensus disorder prediction 508 543 - -
Cone19ag0228 565 MobiDBLite consensus disorder prediction 48 72 - -
Cone19ag0228 565 ProSiteProfiles Protein kinase domain profile. 99 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0228 565 Gene3D Transferase(Phosphotransferase) domain 1 182 422 - -
Cone19ag0228 565 FunFam probable serine/threonine-protein kinase At1g54610 182 423 - -
Cone19ag0228 565 Pfam Protein kinase domain 102 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0228 565 FunFam probable serine/threonine-protein kinase At1g54610 89 181 - -
Cone19ag0228 565 SUPERFAMILY Protein kinase-like (PK-like) 101 388 IPR011009 -
Cone19ag0228 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0228 565 PANTHER CELL DIVISION PROTEIN KINASE 102 383 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone19ag0228 565 CDD STKc_CDK9_like 102 383 - -
Cone19ag0228 565 MobiDBLite consensus disorder prediction 412 496 - -
Cone19ag0228 565 MobiDBLite consensus disorder prediction 48 75 - -
Cone19ag0228 565 MobiDBLite consensus disorder prediction 508 527 - -
Cone19ag0228 565 SMART serkin_6 99 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0228 565 MobiDBLite consensus disorder prediction 447 469 - -
Cone19ag0228 565 Gene3D Phosphorylase Kinase; domain 1 90 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0228 Cone-Chr19:1478009 Cone4ag0174 Cone-Chr4:812123 1.51E-230 dispersed
Cone13ag0248 Cone-Chr13:1682016 Cone19ag0228 Cone-Chr19:1478009 0 wgd
Cone13ag0210 Cone-Chr13:1354774 Cone19ag0228 Cone-Chr19:1478009 3.08E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82370 PF01245 Ribosomal_L19 2.10E-31 CL0107 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0228 K08819 - mdm:103428263 828.55