Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0242 ATGTCGTCGGAAGTATCGATCGAAGGAAATTCCTGTACTGGAATGGGGGAGAGCTTCTCCCCCGGTTTCAACGAGCACCGCGGCTCTAGGAACGATAAGGAAGGCCAGAAAGCTTATTCTGCAAAAGACGCTGAAACTGCGCTCTACACAGAGCTCTGGCACGCCTGTGCTGGTCCTCTCGTCACTGTTCCTTGCGAAAAGCAGCGCGTCTTCTACTTTCCTCAGGGGCACATCGAGCAGGTGGAAGCGTCTACAAATCAAGTGGCAGACAAGCAGATGCCTTCATATAACCTTCCATATAAGATCCTTTGCCGAGTAATTAACGTACACTTGAAGGCAGAACCGGACACTGATGAGGTCTACGCCCAGATCACCTTGCTTCCAGAATCTAATCAAGATGAGAATGCAGTAGAAAAGGAACCTCCTCCTCCTTCACATCCACGTTTACATGTGCACTCATTTTGTAAGGCTCTAACAGCCTCAGATACAAGTACTCATGGTGGATTTTCAGTGCTGAGACGGCATGCTGACGAATGCCTTCCCCTGTTGGACATGTCTCGACAACCTCCTACACAAGAATTGGTTGCCGAGGATTTGCATGGGAACGAATGGCGATTTCGACATATCTTCCGAGGTCAACCGCGAAGGCATCTACTTCAAAGTGGTTGGAGTGTATTTGTGAGCTCAAAAAGGCTGGTTGCAGGGGATGCATTCATATTTCTAAGGGGAGAGAATGGAGAACTACGTGTAGGGGTTAGACGTGCTATGAGGCAGCAGGGTAATATTCCATCTTCAGTCATATCCAGTCATAGTATGCATCTTGGTGTCCTCGCAACCGCCTGGCATGCAATTCAAACTGGAACCATGTTTACTGTGTATTACAAGCCCAGGACAAGCCCTTCTGAATTCATTGTTCCATTTGAACAGTATATGGAGTCGGTTAAGAAGAATTATTCTATTGGAATGAGGTTTAAAATGAAATTTGAAGGCGAAGAAGCTCCGGAACAGAGGTTCACTGGTACTATTGTTGGGATGGAGGATGCCGATCCCGAAAGGTGGAAAAACTCCAAATGGAGATGCCTTAAGGTGAGATGGGATGAGACTTCTACAATTCCTCGCCCAGAAAGAGTCTCGCCTTGGAAAATAGAGGCTGCTCTAGCTCCTCCTGCAATGAATCCCCTTCCAGTGCCAAGGTCAAAAAGACCTCGTTCAAATGTGGTTCCCTCCTCCCCTGACTCCTCTGTCCTTACTCGAGAAGGTTCATCAAGATTGACCGCAGACACTCAACCTGCTAGTGGGTTTACGAAGGTCTTGCAGGGTCAAGAATTCTCGACCTTGAGAGGCAATTACACAGAAAGCAATGCATCTGACACTGTTGAAAAATCAGTTGTATGGCCTCCTTCAGTAGATGATAAAGTGGACGTGGTTTCTTCTAGAAGACATGGAGCTGAAAACTGGATGCCTCCAGGAAGAAATGAGCCGACCTACACTGATCTTCTATCGGGCTTCAATTCAAATACTTATTCCACCCGTGGTAGCCATCAAGCCTTTGTAGATCCAGCAGTTGCTGCTAATTCAATTAGAACACATTCAACGGATCGGGATGGAAAGTTTAACTTGCTTGGTAGCCCGTGGTCCTTTATGTCTCCTAGTCTGTCACTTAACCTGGTGGACTCTAATCTGAAAGGCCATCAGCAAGTTAGTGAGCGGCCTTTTGAAACTCGGGGAAAGGCTAGATATGATGGGTTTAGTGACTATTCTATGCTCCATGATAGAAACGAAGCCCCCACCCCACAAGGAAACTGGTTAATGCCTCCACCTCCCCCGTTTCATTTTGACAATCCAGTTCATTCAAGGGAGTTGGTACCAAAACCCACATTAGTACAGAACCATGAGGCTGCCAAACCAAAAGATGGGGATTGCAAGCTTTTTGGTATCTTCATTAGGAATCCTGTTACATCAGATCCTGCACCTGCTAATGAATCTGATCAGAAGTCTGAGCATTCAAGAGGTTCAAAATCTACCGATAACCCTCTAGGTATGAACGAGCCTGACAAACCTCAACATAACTCTAAGCACTATATAAGAGATGTTCAGGGAAAATCACAGGGTGGTTCAACTAGGAGTTGTACAAAGGTCCATAAGCAGGGAATTGCTTTAGGTAGATCAGTGGATCTTAGTAAGTTCAGCAACTATGATGAACTGATTGCTGAGCTGGATGACCTGTTTGGATTTGGTGGGGGGTTAATGGCTCCCCAAAAGAATTGGCTGATTATATATACCGATGATGAGGGTGATACTATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGCCATGGTTCGTAAGATATTCATATATACAAGAGAAGAGGTGCAGAAGATGAATCCAGGGTCTCTACATGCAAAAACCGAGGAAAATGCTCTGGTTGGTGAAGGTGCCGAGGCAAAAGAGGTTAAAAGTCAGTCAATACCTTCTTCTCCACCAAGCTCTGAGAAATCATGA 2508 46.01 MSSEVSIEGNSCTGMGESFSPGFNEHRGSRNDKEGQKAYSAKDAETALYTELWHACAGPLVTVPCEKQRVFYFPQGHIEQVEASTNQVADKQMPSYNLPYKILCRVINVHLKAEPDTDEVYAQITLLPESNQDENAVEKEPPPPSHPRLHVHSFCKALTASDTSTHGGFSVLRRHADECLPLLDMSRQPPTQELVAEDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNIPSSVISSHSMHLGVLATAWHAIQTGTMFTVYYKPRTSPSEFIVPFEQYMESVKKNYSIGMRFKMKFEGEEAPEQRFTGTIVGMEDADPERWKNSKWRCLKVRWDETSTIPRPERVSPWKIEAALAPPAMNPLPVPRSKRPRSNVVPSSPDSSVLTREGSSRLTADTQPASGFTKVLQGQEFSTLRGNYTESNASDTVEKSVVWPPSVDDKVDVVSSRRHGAENWMPPGRNEPTYTDLLSGFNSNTYSTRGSHQAFVDPAVAANSIRTHSTDRDGKFNLLGSPWSFMSPSLSLNLVDSNLKGHQQVSERPFETRGKARYDGFSDYSMLHDRNEAPTPQGNWLMPPPPPFHFDNPVHSRELVPKPTLVQNHEAAKPKDGDCKLFGIFIRNPVTSDPAPANESDQKSEHSRGSKSTDNPLGMNEPDKPQHNSKHYIRDVQGKSQGGSTRSCTKVHKQGIALGRSVDLSKFSNYDELIAELDDLFGFGGGLMAPQKNWLIIYTDDEGDTMLVGDDPWQEFCAMVRKIFIYTREEVQKMNPGSLHAKTEENALVGEGAEAKEVKSQSIPSSPPSSEKS 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1587389 1593183 - Conep19aG0024900.1 Cone19ag0242 458679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0242 835 Gene3D - 151 256 IPR015300 -
Cone19ag0242 835 SMART B3_2 154 256 IPR003340 GO:0003677(InterPro)
Cone19ag0242 835 MobiDBLite consensus disorder prediction 652 691 - -
Cone19ag0242 835 FunFam Auxin response factor 703 797 - -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 799 835 - -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 1 38 - -
Cone19ag0242 835 Pfam AUX/IAA family 754 796 IPR033389 -
Cone19ag0242 835 SUPERFAMILY CAD & PB1 domains 707 785 - -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 403 429 - -
Cone19ag0242 835 FunFam Auxin response factor 152 256 - -
Cone19ag0242 835 CDD B3_DNA 152 254 IPR003340 GO:0003677(InterPro)
Cone19ag0242 835 Gene3D - 317 387 - -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 821 835 - -
Cone19ag0242 835 Gene3D - 704 797 - -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 1 18 - -
Cone19ag0242 835 ProSiteProfiles PB1 domain profile. 708 792 IPR053793 -
Cone19ag0242 835 MobiDBLite consensus disorder prediction 389 429 - -
Cone19ag0242 835 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 798 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone19ag0242 835 FunFam Auxin response factor 317 389 - -
Cone19ag0242 835 SUPERFAMILY DNA-binding pseudobarrel domain 151 283 IPR015300 -
Cone19ag0242 835 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677(InterPro)
Cone19ag0242 835 Pfam Auxin response factor 280 362 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone19ag0242 835 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0871 Cone-Chr11:7212441 Cone19ag0242 Cone-Chr19:1587389 1.57E-131 dispersed
Cone13ag0695 Cone-Chr13:6850298 Cone19ag0242 Cone-Chr19:1587389 3.07E-198 dispersed
Cone19ag0242 Cone-Chr19:1587389 Cone19ag0688 Cone-Chr19:5790271 3.43E-200 dispersed
Cone13ag0257 Cone-Chr13:1771296 Cone19ag0242 Cone-Chr19:1587389 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45281 PF00069 Pkinase 5.70E-42 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0242 K14486 - vvi:100268072 1179.85