Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0248 ATGCCATTTGAAGTTATTCATCAAAGGGGCCCTTCTGCCTCATCCCATTTCTTTGAAGGAATTTGCTCCCAATCCGAGAGGCAAGTTGGGTTTCAGAAGCCACAAGCTACTCCTGACAATCAAGTGGGAACGGAGGGTACTAAGTCAGTGTTCGGTGACAAACTGGACGCTTCTTCTCCCTTGGAAAAACTTGTGCCAATTGAGATGCAGTCAGCTGATTGTGTGGAACTCCGGAATTTTACAGAAAAGCTTTGCATTGGTGGAGGCAAAGGAAGCTATGGTTTCTCCAAGCCTTCATTGATATATAGAGATCAACATCCAAAATTGAGGTCAAATTTGTATATGCAGCAGTCATCTTGTTGTGCAGACGGATTGCAGAAAACCATTATTGGTGGTGCTGAGTCTGAAAGTAGTCTCTTCTCAAGCTCATTTTCAGACATTTATAGCAGAAAGTGGAAATCATCTGGGGATGACGTTCCCTTTCGTCAGTCTCATAATTCCCATGTCAAGAAAGAATCAAGTCAGTCTTATGAGGAAATTGAGGCACAAGCTATTGGAAGTATGCTTCCTGATGAAGATGATCTGTTTTTTGGCATGCTTGATCACCTGGGACCTAGTCTTCCTGCCTGTGGCATTGATGGGGACTTTGATCTGTTTAGCAGTGGTGGTGGCATGGAATTAGAAGGTGAGAATAAATCAAGGGTAGTGCAAAGAACCGATCCAACTAGTCAAATTCTAGAGGGTCGAGCACTTTCTGAACCAAGTTTTGGCGAGCGTCCTTCTAGAATACTCTTTGTAAGAAATATTAATGGGAATGTTGAGGATTCTGAATTAAAGACTCTTTTTGAGCAATATGGAAATATTCAAACTCTATATACAGCTTGCAAGTATCGGGGGTTTATTGTGATATGTTTCTATGACATAAGGGCGGCCCAAAATGCAGTGAAATCGCTTCAAAATAAGACATGGAAGCAAAAGAAGCTTGACATACATTATTTAATACCCAAGGAGAATCCTTCTGATGAAGCTAACCAGGGTCCCATTGTGTCATTCAACTTTGATCCATCTGCTGTCAAACAATTTGGCTTTTTTGAGTCCGGTGAATTTCAAGAGGGAAAAAAGTATGCTAACCAAGTCCATCATGGCTTCCACTCTCATTCCTTCCCTGAGCATCTTGATAATTTGAGTAATGGTACCACGCTATGCGAGTCTTTGAGCTCGATCAGAAATATGTCTAGCAATGTAGGTCTAATGTGGAGAGAAGGAACTGAGAGCAGACATATTCATGGAGTAAGTCCAAATGGCCAACTGATGGAACAATGCAGAAGAGCTGTCGGATCCAATTCATACTACCAACATACTCCAAACAACTCTATTATCTGGGGAAAGTCACTTTCATATGTCAATGGGTTCCAAGAACATAGCCTTCCCAAAAGTCCCGGCGGATTTCATCGACCTCCTCCTCATTTATCCAATACAACATCTGCCCACCAGCACCACATGGGGTCTGCCCCAACTGTCTATCCCTCCCCTAATTGGGACAAGCGTTATGCTTATTCAGGGGAATCTCCTCAAGCTTCTAGTTATGAGATGGGTTCTTTTGGTAGTATCTTTTCTCATGTTGGTGGAAATTCCATGGACATGAATACAAATGTTGGACAACAGTTTCATCAGCAAATGGGTCATGCTTTTCCTGAAAGGAAGTCTGTAATAGCAATGCCTGTAAATTTTGATGCACCCAATGGACGTATGAGAAGCCTCTCTCATAGGAGAAGTGATACAAACTTCAATAATGTGGATAAGAAGCAATATGAGCTTGATATTGACCGGATCTTGTGTGGGGTCGATAGTAGGACTACTCTGATGATAAAGAATATTCCTAACAAGTATACTTCGAAAATGCTTCTTGCTGCAATTGATGAGAACTGCCGAGGATCTTATGATTTTATCTATTTGCCAATCGACTTCAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAATATGATTGATCCTCAAGGGATTATTCCATTTCATCAGGCATTCAATGGCAAGAAATGGGAGAAGTTTAATAGTGAAAAGGTGGCATCTCTTGCATATGCTAGGATTCAAGGAAAAGCTGCTCTTATTGCGCATTTCCAGAATTCAAGCTTGATGAATGAGGATAAACGTTGTCGCCCAATTCTCTTCCACACCACTGGTCCTAATGCTGGTGATCAGGAGCCCTTCCCCATGGGCTGTTCGAAATATGATAGAGAGAAAACAAATTCCATTCCAGTGGTAATGAGGAGAATCACAACATAG 2304 41.71 MPFEVIHQRGPSASSHFFEGICSQSERQVGFQKPQATPDNQVGTEGTKSVFGDKLDASSPLEKLVPIEMQSADCVELRNFTEKLCIGGGKGSYGFSKPSLIYRDQHPKLRSNLYMQQSSCCADGLQKTIIGGAESESSLFSSSFSDIYSRKWKSSGDDVPFRQSHNSHVKKESSQSYEEIEAQAIGSMLPDEDDLFFGMLDHLGPSLPACGIDGDFDLFSSGGGMELEGENKSRVVQRTDPTSQILEGRALSEPSFGERPSRILFVRNINGNVEDSELKTLFEQYGNIQTLYTACKYRGFIVICFYDIRAAQNAVKSLQNKTWKQKKLDIHYLIPKENPSDEANQGPIVSFNFDPSAVKQFGFFESGEFQEGKKYANQVHHGFHSHSFPEHLDNLSNGTTLCESLSSIRNMSSNVGLMWREGTESRHIHGVSPNGQLMEQCRRAVGSNSYYQHTPNNSIIWGKSLSYVNGFQEHSLPKSPGGFHRPPPHLSNTTSAHQHHMGSAPTVYPSPNWDKRYAYSGESPQASSYEMGSFGSIFSHVGGNSMDMNTNVGQQFHQQMGHAFPERKSVIAMPVNFDAPNGRMRSLSHRRSDTNFNNVDKKQYELDIDRILCGVDSRTTLMIKNIPNKYTSKMLLAAIDENCRGSYDFIYLPIDFKNKCNVGYAFINMIDPQGIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTTGPNAGDQEPFPMGCSKYDREKTNSIPVVMRRITT 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1630154 1636799 + Conep19aG0025500.1 Cone19ag0248 458685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0248 767 SUPERFAMILY RNA-binding domain, RBD 259 686 IPR035979 GO:0003676(InterPro)
Cone19ag0248 767 Pfam RNA recognition motif 264 328 IPR000504 GO:0003723(InterPro)
Cone19ag0248 767 CDD RRM3_MEI2_like 621 706 IPR034454 -
Cone19ag0248 767 MobiDBLite consensus disorder prediction 30 54 - -
Cone19ag0248 767 CDD RRM1_MEI2_like 261 337 IPR034453 -
Cone19ag0248 767 MobiDBLite consensus disorder prediction 30 47 - -
Cone19ag0248 767 PANTHER RNA RECOGNITION MOTIF-CONTAINING 371 742 - GO:0045836(PANTHER)
Cone19ag0248 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 335 IPR000504 GO:0003723(InterPro)
Cone19ag0248 767 MobiDBLite consensus disorder prediction 477 508 - -
Cone19ag0248 767 SMART rrm1_1 263 331 IPR000504 GO:0003723(InterPro)
Cone19ag0248 767 SMART rrm1_1 620 696 IPR000504 GO:0003723(InterPro)
Cone19ag0248 767 Pfam RNA recognition motif 2 618 714 IPR007201 -
Cone19ag0248 767 Gene3D - 251 348 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0248 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0248 Cone-Chr19:1630154 Cone8ag1573 Cone-Chr8:11727520 2.16E-123 dispersed
Cone13ag0265 Cone-Chr13:1848616 Cone19ag0248 Cone-Chr19:1630154 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0265 Cone19ag0248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2