Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0250 ATGGGGAACTGCTGCTCCGACAAGGTCGGCGGTCGCACTGCCGTCGGAGGTACTGCTTCCTCTCTCTACAATATCTACGACGAACCAAACGATGCCGTCAATAGCTTCTTGAGATCTCGTGACTACTGCGGCATCTTCTCTCAGATCGAGTTATCGTACTCTGCTTCAAACCTGCGTGATCGGGATGTCTTCTCCAAGAGTGATCCAATGGTGGTTATATATACAAGAGGAAGGGATGGAACAATTGAAGAATTTGGCCGCACTGAAGTCATCCTAAATTCACTAAATCCCAAATGGATCAGAAAACATACTATCACCTTTCATTTTGAGGTTGTTCAGACTTTGGTGTTTCGTGTGTATGACGTTGATACTCAGTTTCACAATTTAGATGTTAAGATGCTCAAGCTTGATGAGCAGCAATATCTCGGCGAGGCAACTTGTGCACTGTCGGAGATAGTCACTAAAGCAGATAGGTCACTGACCTTAGATCTTATATTCAGGGAAGATTCTGTCAGAACTCATTCCTATCACCGTGGAAAGCTCACTGTTTGTGCTGAGGAATGTTTTAATTCAAAAACCACAGCGGAAGTGATATTAAGATGCTCCGAATTGGATAACAAGGATCTCTTCTCAAAAAGCGACCCCTTTTTGGTAATTTCAAGATTTGTTGAGAGCGGGATCCCAATTCCAGTTTGCAAGACGGAAGTAATAAAAAATGATCTGAAACCAACATGGAATCCAATATTCTTGAATATTCAACAAGCTGGAAGCAAGGACAGTCCATTAATAATAGAGTGCTTAAATTTCAATAGCAGTGGAAAGCACGATTTGATCGGAAAAGTTCAGAAATCCCTAGCAGATTTGGAAAAGCTACATTTAAGCAGACAAGGAGAAAGTCTATTCATACCAACTACTGTTGGACATGATTTCCACAACAAAATATTAAAAGGTCAGCTTTTCGTGGAAAAATATTCTGAGAACATTCAACATACATTTCTGGGTTACTTGGCTGGGGGATGGCAATTGAACTTTATGGTAGCTGTTGATTTCACAGCTTCAAATGGGAACCCTCGCCTCCCAGATTCCTTGCATTATATTGATCCTTCGGGGCGTCCGAATGCATACCAAAGAGCAATTCTGGAGGTTGGAGAAGTGTTGCAGTTCTATGATTCAGACAAACGCTTTCCTGCCTGGGGATTTGGAGCCCGACCAATAGATGGTCCAGTCTCTCATTGTTTCAACTTGAATGGAAGTAGTCACTACTGTGAGGTTGAAGGAATCCAGGGAATTATGATGGCATATAATAGTGCGCTCCTTAATGTATCTCTTGCAGGGCCAACTCTTTTTGGTCCTGTGATTAGCAATGCAGCCCTAATTGCCAGCCAGTCTCTAGCTAATGGTGGACGAAAATATTTTGTTTTGTTAATTATTACGGATGGAGTAGTAACGGATCTCCAGGAAACTAGAGATGCACTGGTGAAAGCATCAGACCTGCCTTTGTCAATTCTCATTGTTGGAGTTGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCAGACAAAGGAGATAGGCTTGAAAGCTCAACTGGACGTGTTGCCTCACGTGATATAGTTCAGTTTGTTCCATTCCGAGATGTACAAAGTGGGGAGATTTCTGTTATTCAAGCACTTCTAGCAGAATTACCCACCCAATTTCTGACTTATATGCGCAGTAGAGATATTCAGCCCAATCCATGA 1740 42.24 MGNCCSDKVGGRTAVGGTASSLYNIYDEPNDAVNSFLRSRDYCGIFSQIELSYSASNLRDRDVFSKSDPMVVIYTRGRDGTIEEFGRTEVILNSLNPKWIRKHTITFHFEVVQTLVFRVYDVDTQFHNLDVKMLKLDEQQYLGEATCALSEIVTKADRSLTLDLIFREDSVRTHSYHRGKLTVCAEECFNSKTTAEVILRCSELDNKDLFSKSDPFLVISRFVESGIPIPVCKTEVIKNDLKPTWNPIFLNIQQAGSKDSPLIIECLNFNSSGKHDLIGKVQKSLADLEKLHLSRQGESLFIPTTVGHDFHNKILKGQLFVEKYSENIQHTFLGYLAGGWQLNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAILEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYNSALLNVSLAGPTLFGPVISNAALIASQSLANGGRKYFVLLIITDGVVTDLQETRDALVKASDLPLSILIVGVGGADFKEMEVLDADKGDRLESSTGRVASRDIVQFVPFRDVQSGEISVIQALLAELPTQFLTYMRSRDIQPNP 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1644555 1652210 + Conep19aG0025700.1 Cone19ag0250 458687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0250 579 CDD vWA_copine_like 312 566 IPR010734 -
Cone19ag0250 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 288 IPR035892 -
Cone19ag0250 579 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Cone19ag0250 579 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Cone19ag0250 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Cone19ag0250 579 PANTHER COPINE 30 578 IPR045052 GO:0005544(InterPro)|GO:0005544(PANTHER)|GO:0005886(PANTHER)|GO:0071277(PANTHER)
Cone19ag0250 579 SMART VWA_4 341 538 IPR002035 -
Cone19ag0250 579 CDD C2B_Copine 195 290 IPR037768 -
Cone19ag0250 579 CDD C2A_Copine 47 165 - -
Cone19ag0250 579 FunFam Protein BONZAI 2 195 327 - -
Cone19ag0250 579 Gene3D C2 domain 52 195 IPR035892 -
Cone19ag0250 579 FunFam Protein BONZAI 1 51 194 - -
Cone19ag0250 579 Pfam Copine 362 577 IPR010734 -
Cone19ag0250 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 164 IPR035892 -
Cone19ag0250 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Cone19ag0250 579 Gene3D C2 domain 196 322 IPR035892 -
Cone19ag0250 579 SMART C2_3c 198 297 IPR000008 -
Cone19ag0250 579 SMART C2_3c 40 161 IPR000008 -
Cone19ag0250 579 Pfam C2 domain 198 291 IPR000008 -
Cone19ag0250 579 Pfam C2 domain 53 157 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0250 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0009 Cone-Chr5:68856 Cone19ag0250 Cone-Chr19:1644555 5.89E-267 transposed
Cone13ag0266 Cone-Chr13:1864543 Cone19ag0250 Cone-Chr19:1644555 0 wgd
Cone13ag0185 Cone-Chr13:1149657 Cone19ag0250 Cone-Chr19:1644555 4.58E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83