Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0252 ATGGCTCACGCTAGCCAACACCAACTTCCCATCGATGGCGACGGCATTTGCATGCTCTGTAAGGCGACGCCATTGGAGGGGGAGAGGCTTGCTTGCAAAACCTGTGTTACGCCATGGCACGTAGGCTGTCTTTCTGTTCTACCGGAAACCCTAGCTTCTACCGACGATTGGGAATGTCCTGACTGTACTTATCTTCCCGGCGATCTTCCGGAAGTTCCGGTTGAGCTGTCATTTATCCCCGGTGAAAGCTCCAGTGGCTTGGTTGCTGAGATCAGAGCGATCGAGGCTGATGATTCGTTGACTGAGCGAGAGAAGGCGAAGAAGCGTCAGGAACTATTGGGCGGGAAAGCTGGGACGGAGGAGGATGAAAATGAGGTCGGGAAGAAGAGGAAGAGACGGAATGCGCCATCTTTGCTTGATCATTTCTTATGTGGTGTCTGTCGTGGCGTTCCGGAGAGGCCCGTCTCGACTCCTTGTGGCCACAATTTCTGCCTACGATGCTTCCAGAAGTGGACTGGACAAGAACGGAAAAGGACCTGTGTTACGTGCCGCCATCCAATTCCATCCAAAATGGCAACCCAACCCCGCATCAACTCTACACTTGTTGCTGCCATTCGAATGGCAAAGATGTCTGATGTAGATGGTCCTGCTCTACCTCAAAAGGTTTATCATTTTGTACACAACCAGGATAGGCCAGATAAGGCCTTTATGACAGAGCGATCACAAAGGAAGGGTAAATCCAATGCAGCAAGTGGAAAGATATTTGTTACAATACCATCCGATCATTTTGGACCCATTCCAGCTGAAAATGATCCTGAGAGGAATCAGGGTGTGTTGGTTGGTGAGTGTTGGGAGGACAGAATGGAATGTCGCCAATGGGGTGCTCACTTTCCGCATGTTGCTGGTATTGCTGGGCAGTCAAATTATGGTGCACAGTCTGTGGTTCTTTCTGGGGGGTACCAAGATGATGAGGATCATGGAGAGTGGTTTCTCTACACAGGAAGTGGGGGCAGAGACTTAAGTGGAAACAAAAGAACAAGCAAAGACCAGTCATTTGACCAGAAATTTGAGAAAATGAACAAAGCTCTGCTAGTTAGTTGTCTGAAAGGATATCCTGTCAGGGTAGTTCGGTCCTACAAGGAAAAGCGCTCTTCATATGCCCCAGAGAAGGGCCTCCGGTATGACGGAGTTTATAGAATTGAAAAATGTTGGCGAAAAGTGGGTATCCAGGGCTATAAGGTGTGTCGTTACTCGTTTGTTAGATGTGACAACAGTCCTGCTCCATGGACAAGTGACGAACATGGAGATCGTCCTAGACCTCCTCCAAGAATTCCAGAGTTGCTTAATGCTACAGATATAATAGAGAGGAGGGGAGAGCCATCATGGGGCTTCAATGCTGATGAGAATTTCTGGAAGTGGTTGAAACCACCACCGGTTAGCAAGAGACCAGTTGGCATCCCTGATTCTGATTCCTTGAAGAGCTCTAGGAGAGCAATTCGGAGGACAAAACAATTGACCATCCGTCAAAAATTGCTGAAAGAATTCAGCTGCGTTATTTGCAAGGAGGTAATGAATCTTCCAGTGACAACACCTTGTGCCCATAACTTCTGTAAGGCATGCTTGGAAGGTGCTTTTTCTGGGAAGACATTCATTAGAGAGAGAAACAAAGGAGGAAGGTCACTCAGATCCCAAAAGAATATCATGACTTGTCCTTCATGCCCAAATGATATCTCCGATTTTCTTCATAACCCTCAGGTAAATAGGGAGTTGTTGGATGTGATTGAGACTCTGAAAAACGAGCCTGGAGATGACGAAGAAGCTGATGCTGATGGCGAGGGCGAAGATTCTGGAGATGAAGAAAACTTAGAGGAAGAACATGAAGAAGAAGCCGATCCTGAGAATAAGAAGGAAAGGGAGGATGATAACAAAGAAGGAATTGTTGTAGATAGGAAAATGAAGGGAATTCTTATTGATGAAGGCTGTGAGGAAATGCAAGAGAAAGCTGCTGATGCCATGGTGCAAGAGGATGGAGATATTTCTCCTTCGAGTCCTCTCCAGGTACGGTCTGAGGACGATGACTTTGAATGA 2088 47.13 MAHASQHQLPIDGDGICMLCKATPLEGERLACKTCVTPWHVGCLSVLPETLASTDDWECPDCTYLPGDLPEVPVELSFIPGESSSGLVAEIRAIEADDSLTEREKAKKRQELLGGKAGTEEDENEVGKKRKRRNAPSLLDHFLCGVCRGVPERPVSTPCGHNFCLRCFQKWTGQERKRTCVTCRHPIPSKMATQPRINSTLVAAIRMAKMSDVDGPALPQKVYHFVHNQDRPDKAFMTERSQRKGKSNAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRMECRQWGAHFPHVAGIAGQSNYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKMNKALLVSCLKGYPVRVVRSYKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGYKVCRYSFVRCDNSPAPWTSDEHGDRPRPPPRIPELLNATDIIERRGEPSWGFNADENFWKWLKPPPVSKRPVGIPDSDSLKSSRRAIRRTKQLTIRQKLLKEFSCVICKEVMNLPVTTPCAHNFCKACLEGAFSGKTFIRERNKGGRSLRSQKNIMTCPSCPNDISDFLHNPQVNRELLDVIETLKNEPGDDEEADADGEGEDSGDEENLEEEHEEEADPENKKEREDDNKEGIVVDRKMKGILIDEGCEEMQEKAADAMVQEDGDISPSSPLQVRSEDDDFE 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1667868 1672361 - Conep19aG0025900.1 Cone19ag0252 458689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0252 695 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Cone19ag0252 695 SUPERFAMILY FYVE/PHD zinc finger 7 68 IPR011011 -
Cone19ag0252 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 211 IPR013083 -
Cone19ag0252 695 ProSitePatterns Zinc finger PHD-type signature. 17 62 IPR019786 -
Cone19ag0252 695 Pfam SAD/SRA domain 275 424 IPR003105 -
Cone19ag0252 695 Pfam Zinc finger, C3HC4 type (RING finger) 143 188 - -
Cone19ag0252 695 SUPERFAMILY RING/U-box 511 600 - -
Cone19ag0252 695 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 625 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone19ag0252 695 SMART PHD_3 16 63 IPR001965 -
Cone19ag0252 695 MobiDBLite consensus disorder prediction 629 673 - -
Cone19ag0252 695 ProSiteProfiles Zinc finger RING-type profile. 144 184 IPR001841 -
Cone19ag0252 695 MobiDBLite consensus disorder prediction 601 628 - -
Cone19ag0252 695 ProSiteProfiles Zinc finger RING-type profile. 517 573 IPR001841 -
Cone19ag0252 695 SMART G9a_1 268 425 IPR003105 -
Cone19ag0252 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 64 IPR013083 -
Cone19ag0252 695 SUPERFAMILY RING/U-box 137 202 - -
Cone19ag0252 695 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Cone19ag0252 695 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Cone19ag0252 695 SMART ring_2 144 183 IPR001841 -
Cone19ag0252 695 SMART ring_2 517 573 IPR001841 -
Cone19ag0252 695 MobiDBLite consensus disorder prediction 598 695 - -
Cone19ag0252 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 614 IPR013083 -
Cone19ag0252 695 SUPERFAMILY PUA domain-like 248 444 IPR015947 -
Cone19ag0252 695 Gene3D - 244 439 IPR036987 -
Cone19ag0252 695 MobiDBLite consensus disorder prediction 100 131 - -
Cone19ag0252 695 Pfam RING-type zinc-finger 517 549 IPR027370 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0252 Cone-Chr19:1667868 Cone7ag0355 Cone-Chr7:1542641 4.45E-19 dispersed
Cone13ag0268 Cone-Chr13:1878840 Cone19ag0252 Cone-Chr19:1667868 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0252 K10638 - csv:116401648 884.404