Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0263 | ATGGATGATAATTTTGAAGACAGTAGGCTACCTGAGCTCAAGCTAGATGCTAAGCAAGCTCAGGGGTTTCTCTCATTCTTCAAAACCATGCCTCTCGATTCAAGGGCTGTTCGATTGTTTGATCGGCGGGATTACTACACTGCTCATGGCGATAACGCAATTTTCATCGCAAAGACTTACTATCACACGACAACTGCTCTACGCCAACTGGGAAATGGATCTGATGCTCTCTCAAGCATAACTGTTAATAAAAACATGTTTGAGTCAATTGCTCGAAATCTTCTCCTTGAGAGAACAGACCATACACTTGAGCTCTATGAAGGTAGTGGCTCAAACTGGAATCTTGTAAAATCCGGAACCCCTGGAAATCTTGGAAATTTCGAAGATGTTTTATTTGCCAACAATGAAATGCAAGACACCCCTATAGTCGTTGCAATATATCCTAATTTCCGTGATAATGGTTGCACCATAGGCTTAAGCTATGTTGATTTAACTAAAAGGGTTATTGGCTTGGCTGAATTTCTAGACGACAGTCACTTCACAAATGTCGAATCAACCTTAGTCGGTCTTGGTTGTAAAGAGTGCCTCCTGCCTCAAGAGAATGGAAAGTCAGGTGAAACTAAAGCCGTAACCGATGCATTGACTAGATGTGGTGTGATGTTGACCGAGCGAAAGAAGTCAGACTTTAAAATGAGGGACTTGGTCCAAGACCTTTCTAGGCTGGTCAAAGGTTCTGTTGAACCGGTCAAAGATTTAGTATCTGGGTTTGAATTTGCACCTGGTGCTTTAGGTGCATTGCTTTCTTATGCAGAGTTACTATCAGATGAAAGCAATTATGGGAACTACAGCATTAAAAGGTACAATCTTGACAGCTACATGAGGTTAGATTCTGCAGCTATTAGGGCGTTAAATGTCCTAGAGAGCAAATCTGATGCAAACAAGAATTTCAGCTTGTTTGGTTTGCTGAATAGAACGTGTACTGCTGGAATGGGGAAGAGATTGCTTCACATGTGGCTTAAACAGCCTCTTTTAAATGTAGACGAAATCAATGCCAGGCTGGATTTGGTTCAGGTATTTGTGGAGGATGCTGGACTGCGCCAAGATCTTAGGCAACATCTTAAAAGAATCTCAGATATTGAAAGATTAACACATAATCTTGAGAAGAAAAGAGCCAGTTTGCAGCATGTTGTGAAACTTTATCAATCAATAATCAGACTTCCATACATAAAAAGTGCCTTGGAACAGTATGGAGGGCAATTTTCCTCAGTAATCAAGGAAATGTACTTGAATCCATTAGAATTATGGACGGATGATGAGCACCTGAATAGGTTTGTTGCTCTTGTGGAAACGTCTGTTGACCTAGAACAACTGGAGAATGGGGAATATATGATATCATCAAGTTATGACCAGGCACTGTCTGAGCTGAAGAATGAGCAAGAGTCCTTAGAGCGCCAAATTTACAACCTGCATAAACGAACTGCTGATGATCTTGATCTTCCAATAGACAAGGCTTTGAAGTTAGATAAAGGGACACAATTTGGACATGTCTTTAGAATCACAAAGAAGGAAGAGCCGAAAATAAGGAAAAAGCTCACTACTCAATTCATTGTCCTTGAAACCCGAAAGGATGGAGTGAAATTTACTAATACAAAGCTTAAAAAGTTAGGGGACCAATATCAAAAAATACTGGAGGCATATAGGAATTGCCAGAAAGAGCTAGTTAATCGAGTAGTTCAAACTGCTGCAACCTTCTCTGAGGTGCTAGGATCTTTGGCTGAGTTACTTTCTGAATTGGATGTTTTGCTTAGTTTTGCTGACTTGGCTTCTAGCTGTCCTACTCCTTACACCAGACCTGAAATCACTCAATCGGATCAGGGGGATATTATTTTGGAAGGGAGTAGACACCCTTGTGTCGAGGCTCAGGATTGGGTTAATTTTATACCAAATGATTGCAAACTTGTGAGAGAAAAAAGCTGGTTCCAAATCATTACGGGGCCTAACATGGGTGGCAAATCCACATTTATCCGGCAGGTTGGTGTGAACATTCTAATGGCTCAAATTGGTTCTTTTGTTCCTTGTGATAAGGCCACCATATCTGTCCGTGATTGCATTTTTGCTCGTGTGGGGGCTGGTGACTGCCAGCTGCGAGGAGTGTCCACTTTTATGCAAGAGATGCTTGAAACTGCTTCTATTCTAAAAGGAGCTACAGATAAGTCTCTAATAATCATCGACGAGTTAGGCCGTGGGACATCAACTTATGATGGTTTTGGTTTGGCTTGGGCCATTTGCGAGCACCTTGTTGAAGTGATCAGAGCACCTACGTTATTTGCCACCCATTTTCATGAACTTACTGCATTAGCTCATGAAAATCCTGATAGCGATCCTCAGAGAAAGCAAATTATAGGCGTGGCAAACTACCATGTTAGTGCGCATATAGACTCTTCAACTCACAAGCTGACTATGCTATACAAGGTTGAGCCAGGGGCTTGTGACCAAAGTTTTGGTATTCATGTTGCGGAATTTGCAAACTTCCCTGCAAGTGTTGTGGCCTTGGCTAGAGAAAAAGCCGCAGAATTGGAAGATTTCTCGCCCACTGCATCTCTTTCAGTTCATTCTATAGAAGAGGTCGGATTGAAACGCGGAAGAGAGTTTAGTCCGGATGACATGTCTAGAGGTGTTGCCAGAGCCCGCAAGTTTCTAAAGGAGTTCTCCAATTTGCCCCTCGATGCAATGGATTTGAAAGAGGCTCTTGAACAAGTAAGCAGGTTGAAAGATGACTTCAAGAAGGATGCTTTAGACTCAAACTGGCTCAAGCAATTTCTCTAG | 2826 | 41.93 | MDDNFEDSRLPELKLDAKQAQGFLSFFKTMPLDSRAVRLFDRRDYYTAHGDNAIFIAKTYYHTTTALRQLGNGSDALSSITVNKNMFESIARNLLLERTDHTLELYEGSGSNWNLVKSGTPGNLGNFEDVLFANNEMQDTPIVVAIYPNFRDNGCTIGLSYVDLTKRVIGLAEFLDDSHFTNVESTLVGLGCKECLLPQENGKSGETKAVTDALTRCGVMLTERKKSDFKMRDLVQDLSRLVKGSVEPVKDLVSGFEFAPGALGALLSYAELLSDESNYGNYSIKRYNLDSYMRLDSAAIRALNVLESKSDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLNVDEINARLDLVQVFVEDAGLRQDLRQHLKRISDIERLTHNLEKKRASLQHVVKLYQSIIRLPYIKSALEQYGGQFSSVIKEMYLNPLELWTDDEHLNRFVALVETSVDLEQLENGEYMISSSYDQALSELKNEQESLERQIYNLHKRTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKILEAYRNCQKELVNRVVQTAATFSEVLGSLAELLSELDVLLSFADLASSCPTPYTRPEITQSDQGDIILEGSRHPCVEAQDWVNFIPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQIGSFVPCDKATISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIRAPTLFATHFHELTALAHENPDSDPQRKQIIGVANYHVSAHIDSSTHKLTMLYKVEPGACDQSFGIHVAEFANFPASVVALAREKAAELEDFSPTASLSVHSIEEVGLKRGREFSPDDMSRGVARARKFLKEFSNLPLDAMDLKEALEQVSRLKDDFKKDALDSNWLKQFL | 941 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 1774553 | 1781158 | - | Conep19aG0027300.1 | Cone19ag0263 | 458700 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0263 | 941 | Pfam | MutS family domain IV | 468 | 563 | IPR007861 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | FunFam | DNA mismatch repair protein | 6 | 120 | - | - | |
| Cone19ag0263 | 941 | Gene3D | - | 616 | 937 | IPR027417 | - | |
| Cone19ag0263 | 941 | Coils | Coil | 910 | 930 | - | - | |
| Cone19ag0263 | 941 | Coils | Coil | 369 | 389 | - | - | |
| Cone19ag0263 | 941 | ProSitePatterns | DNA mismatch repair proteins mutS family signature. | 739 | 755 | IPR000432 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | PIRSF | MSH2 | 6 | 941 | IPR011184 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Coils | Coil | 465 | 492 | - | - | |
| Cone19ag0263 | 941 | Gene3D | MutS, connector domain | 121 | 290 | IPR036678 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Gene3D | DNA repair protein MutS, domain I | 7 | 120 | IPR016151 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | SMART | DNAend | 313 | 641 | IPR007696 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Pfam | MutS domain V | 661 | 860 | IPR000432 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | SUPERFAMILY | DNA repair protein MutS, domain II | 143 | 308 | IPR036678 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Pfam | MutS domain I | 22 | 127 | IPR007695 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Pfam | MutS domain III | 298 | 605 | IPR007696 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | Coils | Coil | 552 | 572 | - | - | |
| Cone19ag0263 | 941 | FunFam | DNA mismatch repair protein MSH2 | 616 | 937 | - | - | |
| Cone19ag0263 | 941 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 615 | 861 | IPR027417 | - | |
| Cone19ag0263 | 941 | FunFam | DNA mismatch repair protein MSH2 | 512 | 615 | - | - | |
| Cone19ag0263 | 941 | SUPERFAMILY | DNA repair protein MutS, domain III | 296 | 610 | IPR036187 | - | |
| Cone19ag0263 | 941 | Pfam | MutS domain II | 143 | 282 | IPR007860 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | PANTHER | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | 66 | 924 | IPR045076 | GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0006312(PANTHER)|GO:0030983(PANTHER)|GO:0030983(InterPro)|GO:0032301(PANTHER)|GO:0140664(InterPro) | |
| Cone19ag0263 | 941 | Gene3D | - | 522 | 615 | - | - | |
| Cone19ag0263 | 941 | Gene3D | - | 293 | 521 | - | - | |
| Cone19ag0263 | 941 | SMART | mutATP5 | 658 | 857 | IPR000432 | GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro) | |
| Cone19ag0263 | 941 | CDD | ABC_MSH2_euk | 629 | 860 | IPR032642 | GO:0005524(InterPro) | |
| Cone19ag0263 | 941 | FunFam | DNA mismatch repair protein | 121 | 290 | - | - | |
| Cone19ag0263 | 941 | FunFam | DNA mismatch repair protein | 293 | 510 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0263 | K08735 | - | - | cit:102614656 | 1578.53 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag1154 | Cone-Chr14:9541856 | Cone19ag0263 | Cone-Chr19:1774553 | 4.39E-48 | dispersed | |
| Cone19ag0263 | Cone-Chr19:1774553 | Cone5ag0862 | Cone-Chr5:3679562 | 7.64E-30 | dispersed | |
| Cone19ag0263 | Cone-Chr19:1774553 | Cone1ag1153 | Cone-Chr1:55701682 | 3.82E-55 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g364 | . | . | Bda06g00491 | . | . | . | . | Bma12g00941 | . | . | Cma10g00249 | . | Car10g00237 | . | . | . | . | . | . | . | . | . | . | . | Cla06g01486 | Cam06g1640 | Cec06g1700 | Cco06g1698 | Clacu06g1606 | Cmu06g1555 | Cre06g2367 | . | . | . | Cone19ag0263 | . | . | . | . | . | Blo15g00365 | . | . | Bpe07g00731 | . | . | . | . | Cmo10g00269 | . | . | . | . | . | . | Cpe18g00743 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi06g01348 | Csa01g00363 | Chy02g02380 | Cme02g01765 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007788 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 1 | 36 |