Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0307 | ATGCCGCCTCGAAGATATGCATTTGGGAGGGCCGATGAAGCAAGCCACCCTGACACCATGAGAGCAGCTCTAGCTGAGTTCGTTTCCACTTTCATCTTTGTTTTTGCAGGAGAAGGCTCGATCCTAGCACTTGACAAGATCTACAGGGACGCTGGTATATCAGCATCTGAGCAAATAGTAGTCGCCCTAGCACACGCCTTCTCTCTCTTTGCCGCTGTTTCATCCAGTATTAACATATCAGGCGGCCATGTCAATCCTGCTGTTACATTCGGTGCCCTACTTGGTGGCCGGATTTCTCTCCTTCGAAGTATCTTCTATTGGATCGCTCAACTATTGGGTGCTGTTGTTGCTTCCCTCTTGCTGAGACTCGTCACTGCTGGCATGAGACCACTTGGGTTTTTCTTGTCACCAGGAATCGGGGTAGGCCATGGACTTGTAATGGAGATCGTGCTAACATTCGGCCTGGTTTACATTGTGTATGCTACCGCTATCGATCCCAAAAGAGGCAGCTTGGGTATTATCGGGCCTCTGGCTATTGGGTTAATTGTGGGGGCCAATATGCTTGTTGGTGGGCCGTTTGATGGTGCATGCATGAATCCTGCTCGAGCATTTGGGCCTGCCTTGTTGGGATGGAGATGGATGGACCACTGGATTTATTGGGTAGGCCCACTTTTTGGTGGTGGGCTGGCTGGACTTGTATACGAGTTCATGGTCATTCCAACGGAGCCCCCTCTTACTCACCAGTCTCTGGCCCCTGAAGACTACTAG | 768 | 50.78 | MPPRRYAFGRADEASHPDTMRAALAEFVSTFIFVFAGEGSILALDKIYRDAGISASEQIVVALAHAFSLFAAVSSSINISGGHVNPAVTFGALLGGRISLLRSIFYWIAQLLGAVVASLLLRLVTAGMRPLGFFLSPGIGVGHGLVMEIVLTFGLVYIVYATAIDPKRGSLGIIGPLAIGLIVGANMLVGGPFDGACMNPARAFGPALLGWRWMDHWIYWVGPLFGGGLAGLVYEFMVIPTEPPLTHQSLAPEDY | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 2341700 | 2342799 | - | Conep19aG0031800.1 | Cone19ag0307 | 458744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0307 | 255 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | Pfam | Major intrinsic protein | 14 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | NCBIfam | MIP family channel protein | 25 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone19ag0307 | 255 | SUPERFAMILY | Aquaporin-like | 13 | 244 | IPR023271 | - | |
Cone19ag0307 | 255 | Gene3D | Glycerol uptake facilitator protein. | 5 | 244 | IPR023271 | - | |
Cone19ag0307 | 255 | PANTHER | AQUAPORIN-8 | 5 | 242 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Cone19ag0307 | 255 | FunFam | Probable aquaporin TIP1-1 | 4 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag0465 | Cone-Chr18:2246575 | Cone19ag0307 | Cone-Chr19:2341700 | 4.36E-93 | dispersed | |
Cone19ag0307 | Cone-Chr19:2341700 | Cone3ag0242 | Cone-Chr3:1297684 | 2.48E-107 | dispersed | |
Cone13ag0365 | Cone-Chr13:3340961 | Cone19ag0307 | Cone-Chr19:2341700 | 2.49E-175 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0307 | K09873 | - | mdm:103415378 | 418.698 |