Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0307 ATGCCGCCTCGAAGATATGCATTTGGGAGGGCCGATGAAGCAAGCCACCCTGACACCATGAGAGCAGCTCTAGCTGAGTTCGTTTCCACTTTCATCTTTGTTTTTGCAGGAGAAGGCTCGATCCTAGCACTTGACAAGATCTACAGGGACGCTGGTATATCAGCATCTGAGCAAATAGTAGTCGCCCTAGCACACGCCTTCTCTCTCTTTGCCGCTGTTTCATCCAGTATTAACATATCAGGCGGCCATGTCAATCCTGCTGTTACATTCGGTGCCCTACTTGGTGGCCGGATTTCTCTCCTTCGAAGTATCTTCTATTGGATCGCTCAACTATTGGGTGCTGTTGTTGCTTCCCTCTTGCTGAGACTCGTCACTGCTGGCATGAGACCACTTGGGTTTTTCTTGTCACCAGGAATCGGGGTAGGCCATGGACTTGTAATGGAGATCGTGCTAACATTCGGCCTGGTTTACATTGTGTATGCTACCGCTATCGATCCCAAAAGAGGCAGCTTGGGTATTATCGGGCCTCTGGCTATTGGGTTAATTGTGGGGGCCAATATGCTTGTTGGTGGGCCGTTTGATGGTGCATGCATGAATCCTGCTCGAGCATTTGGGCCTGCCTTGTTGGGATGGAGATGGATGGACCACTGGATTTATTGGGTAGGCCCACTTTTTGGTGGTGGGCTGGCTGGACTTGTATACGAGTTCATGGTCATTCCAACGGAGCCCCCTCTTACTCACCAGTCTCTGGCCCCTGAAGACTACTAG 768 50.78 MPPRRYAFGRADEASHPDTMRAALAEFVSTFIFVFAGEGSILALDKIYRDAGISASEQIVVALAHAFSLFAAVSSSINISGGHVNPAVTFGALLGGRISLLRSIFYWIAQLLGAVVASLLLRLVTAGMRPLGFFLSPGIGVGHGLVMEIVLTFGLVYIVYATAIDPKRGSLGIIGPLAIGLIVGANMLVGGPFDGACMNPARAFGPALLGWRWMDHWIYWVGPLFGGGLAGLVYEFMVIPTEPPLTHQSLAPEDY 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2341700 2342799 - Conep19aG0031800.1 Cone19ag0307 458744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0307 255 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone19ag0307 255 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Cone19ag0307 255 Gene3D Glycerol uptake facilitator protein. 5 244 IPR023271 -
Cone19ag0307 255 PANTHER AQUAPORIN-8 5 242 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cone19ag0307 255 FunFam Probable aquaporin TIP1-1 4 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0465 Cone-Chr18:2246575 Cone19ag0307 Cone-Chr19:2341700 4.36E-93 dispersed
Cone19ag0307 Cone-Chr19:2341700 Cone3ag0242 Cone-Chr3:1297684 2.48E-107 dispersed
Cone13ag0365 Cone-Chr13:3340961 Cone19ag0307 Cone-Chr19:2341700 2.49E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0307 K09873 - mdm:103415378 418.698