Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0310 ATGCTACCAAATAACTCTTTCTCCTCCCTTCCCTCTAATTCCTCCGAGCCTTTCTCTTGCTTAGAAAACAGAAACAACAACAACAACAACAAGAGGAAAAGAAGACCCGCTGGAACTCCAGATCCAGATGCTGAGGTAGTGTCGCTCTCGCCCAAGACATTACTGGATTCGGATCGATACGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAATCTGCAGATGCATAGGAGGAGGCACAAAGTGCCATGGAAGCTGTTGAAGAGAGAGACGCCGGTTGTGAGGAAGAGGGTGTTCGTATGTCCCGAGCCGACCTGCTTGCACCACGATCCATGTCATGCTCTCGGAGATCTCGTCGGGATAAAGAAGCATTTCCGACGGAAACATAGCAGTCATAGACAGTGGGTTTGTGAGAAGTGTTCTAAGTGCTATGCTGTTCAATCTGATTACAAGGCTCACCTTAAGACTTGTGGTACTAGAGGACATTCTTGTGATTGTGGTCGGGTTTTCTCAAGGGTAGAGAGTTTCATAGAACATCAAGATGCTTGCAACATGGGACGTCTACAATCACAGACAATATTTCAAACTCCATGTTTGTCTCGAACAGCTTCTAGTCCAAGCCCATCAAGTGATACCAACTTCAGCAGTACTCCAATTAACACTACTACTGCTGCCGCTGCCGTTACTGCTGCAGCTAATCGAGCTGCTTTATTAATGGTGCCGAATCCAACGGACCGAGATAAACACCACACTCATAATTCCAACATTGTTAGTAATCATACAAGATACAATCTAGAGCTTCAGCTCTCGACCGCATCAAATAACACCATACAAGACGAAAACCGTTCAACCCGGTTGCAGCTCTCCATCGGTTCATGTGATTTTGATAGCGATCATCACAAAAATGAATCAAGAAAAGCCGTGGTAATCAATGGTGATAAGAGTAATGATAATAAAGAGAAAGTTGGTATTTGTGATCGGCAGGTGATTAGGGTGGCTACTGAAGAGAAGAACTACGCAGAAGAGGCAAGAAAGCAAGCAAAGTTGGAGATTGAATTAGCCGAGAAAGAGTTTGCTAATGCGAAGAGAATGAGGCAGCAAGCTCAGATTGAGTTGAACAAGGCTCAAGCTTTGAGACAAAAAGCAATCAAACAGATCAACTCAACTCTTCTTCAAGTCACTTGTCAAAATTGTCAGGAACGATTTCATCATCAAGCAAGAACGGTTAATATGAATACGAGTACGGTAAGTAGTACAACTCCTCATGAACAAAACTCGTTGGTGTTTAGTTACATGTCTTCTGTGATTACTACAGAAGGCGATCGGACCAATAATACTGTTCTTGCAAAATCTGTTAGTAATAATGATTTTAGTTAA 1383 43.24 MLPNNSFSSLPSNSSEPFSCLENRNNNNNNKRKRRPAGTPDPDAEVVSLSPKTLLDSDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHRQWVCEKCSKCYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLQSQTIFQTPCLSRTASSPSPSSDTNFSSTPINTTTAAAAVTAAANRAALLMVPNPTDRDKHHTHNSNIVSNHTRYNLELQLSTASNNTIQDENRSTRLQLSIGSCDFDSDHHKNESRKAVVINGDKSNDNKEKVGICDRQVIRVATEEKNYAEEARKQAKLEIELAEKEFANAKRMRQQAQIELNKAQALRQKAIKQINSTLLQVTCQNCQERFHHQARTVNMNTSTVSSTTPHEQNSLVFSYMSSVITTEGDRTNNTVLAKSVSNNDFS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2386394 2388783 - Conep19aG0032100.1 Cone19ag0310 458747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0310 460 MobiDBLite consensus disorder prediction 1 26 - -
Cone19ag0310 460 SMART c2h2final6 137 164 IPR013087 -
Cone19ag0310 460 SMART c2h2final6 60 82 IPR013087 -
Cone19ag0310 460 SMART c2h2final6 101 131 IPR013087 -
Cone19ag0310 460 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 97 131 - -
Cone19ag0310 460 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Cone19ag0310 460 MobiDBLite consensus disorder prediction 201 220 - -
Cone19ag0310 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cone19ag0310 460 MobiDBLite consensus disorder prediction 1 46 - -
Cone19ag0310 460 FunFam protein indeterminate-domain 12-like 39 107 - -
Cone19ag0310 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 407 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone19ag0310 460 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Cone19ag0310 460 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 186 - -
Cone19ag0310 460 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cone19ag0310 460 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cone19ag0310 460 Coils Coil 332 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0343 Cone-Chr13:2989059 Cone19ag0310 Cone-Chr19:2386394 2.50E-251 dispersed
Cone19ag0310 Cone-Chr19:2386394 Cone2ag0699 Cone-Chr2:32559838 7.95E-120 dispersed
Cone19ag0310 Cone-Chr19:2386394 Cone16ag0268 Cone-Chr16:2992420 1.62E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45291 PF07647 SAM_2 3.20E-13 CL0003 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0310 K25871 - csv:101209426 538.495