Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0314 ATGGCTTCAGAGGCTGATGAGAAGGCATGGGAAGACGCTTTGAGAAAGATGCTTCCAGTTGGTGCGCCATTGCCAGACGAAGAACACCTTGATTACTCCATCGCATTTGAATATCAAGGCCCTCCTGTTTCTTACGAGCTTCCAAAAGTCGATCCGTTGGATTTGGAATCGCTTTCGGTTAGTTCTCCTTCCATGGTTTCTACTTCCGAGAACTCATCAATTCCGGTTGTCTTTCCGATCGGTCCTAGGTTTTCAAGGTTCAATCGTATCAGAAATGGTTGCTTCACTAAGGAACCGCGTGGTACAGTAGAGAATCATAGATCGCCTTCGGTTTCCAGAGCTCAATTGGAAATGCAGAATGGTGACGACTCTGCTTCTGGAAGTGGATTAGAGGAAGCCTTGAGCTCAGAGTTGCTTGTTCAGGGTTCGGATTCAGCGGAAAGACATGAGTTACCTCAAACTAGGCGTACGAACATTGTGACGTTCAACACGCCAAGAGATTCGGAGGATGATGATGAAGAAGTTTCCTCACAGTCACAACAGTCAAATGCTCCTGATGCGCTGTCATTTCCGGCTGGGGCTTCGAATGGAGTAAAGGGATCAAGAAAGAGAGGAAAATGTAGTAGATGTGGTAGAGGAAATTGGTTGAAGGACAGGGAAGCTTGTTTGGTATGTGATGCTAGGTATTGCAGTAATTGTTTGCTAAAGGCAATGGGGTCGATGCCAGAGGGGCGTAAATGCGTGAGCTGCATTGGGCAGCCTATAGACGAGGCAAAGAGGTCTAATTTGGGCAAATGCTCAAGGATATTGTCAAGGGTGTGTAGCCCCTTGGAGGTTAAGCAAATAATGAAAGCGGAGAAGGAGTGCCCATCAAATCAACTTCGACCAGAGCAGCTAATTGTGAATGGAAGGCAGTTGCGGCAAGAAGAATTGGGTGAGATTTTGGGCTGCGCAATCCCTCCACAGAAGTTGAAACCAGGGAGGTACTGGTATGATAAGGATTCGGGGCTTTGGGGAAAGGAGGGAGAGAAGCCTGATATGATAATAAGCTCAAAACTGAATGTTGGCGGTAAACTTATGCCTGATGCAAGTAATGGGAATACAAAAGTTTTCATCAATGGCCGGGAAATCACGAAGGTCGAGCTGAGAATGCTTAAGATGGCTAATGTTCAGTGCCCCCGGGAAACTCATTTTTGGGTGTATGATGATGGATCTTATGAGGAAGAGGGTCAAAATAATATTAAAGGCAACATTTGGGGAAAGGCATCAACGCGTTTTTTGTGTTCGTTATTTTCGTTACCCGTACCTGGTAATGCTAATGGGGCCGTAGAAGATCCAACTGCTTACTCTAGTAGATCTGTGCCCAATTATTTGGAGCAAGGCAAACTTCATAAACTTCTCTTGTTTGGAATGGAAGGATCTGGAACTAGCACTATATTCAAGCAGGCCAAGTTTTTGTATGGGGACAAGTTCATTCCAGAGGAGCTGCAGAACATCAAGTTTATGATTCAAAGCAACCTGTACAGGTATCTTAGTATATTACTTGAAGGACGAGAGCGGTTTGAAGAAGAAGCTATGGAGTCGAAAGATACTGCTTTTGTCGCTCCAGAGTCGGTCTCAGGAGGTGATGAAAATAAGCAATGTATATATTCAATGAACCAGAGGTTCAAGCACTTTTCTGATTGGTTATTGAATATCATGGCTACTGGTGACTTGGATGCTTTCTTTCCTGCTGCTACACGTGAGTATGCACCCATTGTTGGTGATGTCTGGAGGGACACTGCAATTCAGGAGGCGTACAAGAGAAGGGGAGAATTGCATGGCCTTCCTGATGTTGCCAAGTTTTTCTTAGACCGGGCTATAGAGATATCAAGCAATGAGTATGAACCTACAGAGAAGGACATTCTATATGCTGAGGGGGTCACACAGAGCAATGGTCTTGCCTCAATGGAATTTTCTTTTGATGAGAGGAGTGCCGTGTCAGAGATCTACAGTGACAATCTTGAATGCCCACCTCCTTTAACAAAGTACCAACTAATTCGCATAAATTCCAAGGGACTACATGATGGATGCAAATGGCTAGAAATGTTTGAAGATGTGAGGGCAGCAATATTCTGTGTAGCCTTGAGTGACTATGACCAGATGTGGGCCCATGGAATGGGTCCCCTCCGTAATAAAATGTTAGCAGCCAGAGATTTGTTGGAGAGTTTAGTAAAACACCATTGTTTTATAGACACCCCTTTTCTGCTCCTATTGAACAAATATGATGCCTTTGAGGAGAAGATAAACCGAGTTCCTCTGTCAACTTGTGAGTGGTTCAGGGACTTCAGCCCTGTAAAACCCAACCCAAATAATCAAAACCTGGCCCACCAAGCATACTACTATGTTGCTGTGAAGTTCAAGGAGCTCTATTTTTCCATTACTGGCCGGAAGTTATTTGTGTGCCAAACCCGAGCTCTAGAGCGTAGTTCAGTTGATGAGGCATTTAAGTATATCAGGGAGGTTCTTAAATGGAATGAAGAGAGTAACGAATATGGAAATATTGCTGATGATTCATTTTACAGTACTGAAATGAGCTCCTCTCCCTATATGGCGCAAGAATGA 2604 44.35 MASEADEKAWEDALRKMLPVGAPLPDEEHLDYSIAFEYQGPPVSYELPKVDPLDLESLSVSSPSMVSTSENSSIPVVFPIGPRFSRFNRIRNGCFTKEPRGTVENHRSPSVSRAQLEMQNGDDSASGSGLEEALSSELLVQGSDSAERHELPQTRRTNIVTFNTPRDSEDDDEEVSSQSQQSNAPDALSFPAGASNGVKGSRKRGKCSRCGRGNWLKDREACLVCDARYCSNCLLKAMGSMPEGRKCVSCIGQPIDEAKRSNLGKCSRILSRVCSPLEVKQIMKAEKECPSNQLRPEQLIVNGRQLRQEELGEILGCAIPPQKLKPGRYWYDKDSGLWGKEGEKPDMIISSKLNVGGKLMPDASNGNTKVFINGREITKVELRMLKMANVQCPRETHFWVYDDGSYEEEGQNNIKGNIWGKASTRFLCSLFSLPVPGNANGAVEDPTAYSSRSVPNYLEQGKLHKLLLFGMEGSGTSTIFKQAKFLYGDKFIPEELQNIKFMIQSNLYRYLSILLEGRERFEEEAMESKDTAFVAPESVSGGDENKQCIYSMNQRFKHFSDWLLNIMATGDLDAFFPAATREYAPIVGDVWRDTAIQEAYKRRGELHGLPDVAKFFLDRAIEISSNEYEPTEKDILYAEGVTQSNGLASMEFSFDERSAVSEIYSDNLECPPPLTKYQLIRINSKGLHDGCKWLEMFEDVRAAIFCVALSDYDQMWAHGMGPLRNKMLAARDLLESLVKHHCFIDTPFLLLLNKYDAFEEKINRVPLSTCEWFRDFSPVKPNPNNQNLAHQAYYYVAVKFKELYFSITGRKLFVCQTRALERSSVDEAFKYIREVLKWNEESNEYGNIADDSFYSTEMSSSPYMAQE 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2461288 2472151 + Conep19aG0032500.1 Cone19ag0314 458751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0314 867 SUPERFAMILY Transducin (alpha subunit), insertion domain 493 638 IPR011025 GO:0007165(InterPro)
Cone19ag0314 867 MobiDBLite consensus disorder prediction 143 208 - -
Cone19ag0314 867 Gene3D - 637 843 IPR027417 -
Cone19ag0314 867 PANTHER OS01G0977800 PROTEIN 1 435 IPR053057 -
Cone19ag0314 867 FunFam Extra-large guanine nucleotide-binding protein 3 493 639 - -
Cone19ag0314 867 PRINTS Alpha G protein (transducin) signature 748 757 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 PRINTS Alpha G protein (transducin) signature 700 728 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 PRINTS Alpha G protein (transducin) signature 628 650 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 PRINTS Alpha G protein (transducin) signature 465 480 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 ProSiteProfiles G-alpha domain profile. 462 848 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 MobiDBLite consensus disorder prediction 105 131 - -
Cone19ag0314 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 839 IPR027417 -
Cone19ag0314 867 CDD G-alpha 464 839 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 MobiDBLite consensus disorder prediction 96 131 - -
Cone19ag0314 867 Gene3D - 493 636 IPR011025 GO:0007165(InterPro)
Cone19ag0314 867 FunFam Guanine nucleotide-binding protein G(k) subunit alpha 676 846 - -
Cone19ag0314 867 SMART galpha_1 448 847 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone19ag0314 867 Pfam G-protein alpha subunit 463 835 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0501 Cone-Chr12:3391111 Cone19ag0314 Cone-Chr19:2461288 0 dispersed
Cone19ag0314 Cone-Chr19:2461288 Cone9ag1298 Cone-Chr9:9750039 3.09E-253 dispersed
Cone19ag0314 Cone-Chr19:2461288 Cone8ag0500 Cone-Chr8:3559470 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62