Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0327 ATGAACCAAGTCCCGATCTTCCCGGCAACGACAACAACCGTTGGGTCCACCGCCGCCCCGAGCTCAGTCGTTACCGAACCTCCGTCATACACAGCTGATGCCGCCAATCCTGACCCTATCATCGCTCCTTCCACCTCTAATCACCCTCCTTATGACAAGATGATACATACAGCAATCACGGCCCTTAACGAGAGGAATGGTTCGAGCAAGAGAGCCATAGCGAAATACATCGAGCAAATCTACTCGGACCAGCTCCCACCAACTCACTCGGCCTTGTTGACTCACCACCTGACTCGCTTGAAGACCAGCGGTGACCTCGTCATGGTGAAGAAATCGTACAAGCTTCCGAGATCTGACGACGATTCCGCTGTTGCTACCGATTCCCCTACGATGGCTCGTCCTCGTCGTCGTGGACGTCCGGCCCGGCCCAAGCTCACCACTGAGCCCGTATCTGTTTCTCTTGGGCCCGCTGGTGATGAGTCCGTTGTCGTCAAGAGAACCCCTGGCCGTCCACCTAAGACCGGCGCTGCAGACGTGGCTCAGAAGGCCAGTGTTTTGGGGAAGAGGGGAAGAGGCCGTCCGCCTGGGTCCAAGTCTAAGATATCTGCAGTCCGCCCGCCAAAGCCCAAGAGGGGGCGTGGACGACCGCCCAAATCTGACCCCAGAAACACTCCCATACCCATTCCTTACGCTGGGGTAGCTACTGCTATCGTACCACTACTACCCAACGTGGGAGAGGGAGTAAATATGGGCCTGAGTAATCAGCACAGGCCCAGGGGGAGGCCCAGGGGGAGTGGAGCTACGGGAGCTAGCGTGGGATTAGGAGGTGTTAACGGAGGTGTAGTGTACATGAAGCGGCCCGGCCGACCGCCCAAGGTTGATGGAGTTAGAAGGCCCGTGGGCCGGCCCAAGAAGAATGCATCAACCGTTATTGAAGATGCCACCACCAATCCACAGCTTGTCATTTGTGAACAACTTAAAAGGAAGCTTCAATTCTTTCAATCAAAAGTGAAGGAAGCTGTTGGTGTTGTAAAGCCATATTTTGGTAGTGAAAGTGGAGCCATTGGTGCCATTGAAGCAATCCGAGAATTGGAATTGCTTTCTAATCTGGACATAAATGTGTAG 1125 54.49 MNQVPIFPATTTTVGSTAAPSSVVTEPPSYTADAANPDPIIAPSTSNHPPYDKMIHTAITALNERNGSSKRAIAKYIEQIYSDQLPPTHSALLTHHLTRLKTSGDLVMVKKSYKLPRSDDDSAVATDSPTMARPRRRGRPARPKLTTEPVSVSLGPAGDESVVVKRTPGRPPKTGAADVAQKASVLGKRGRGRPPGSKSKISAVRPPKPKRGRGRPPKSDPRNTPIPIPYAGVATAIVPLLPNVGEGVNMGLSNQHRPRGRPRGSGATGASVGLGGVNGGVVYMKRPGRPPKVDGVRRPVGRPKKNASTVIEDATTNPQLVICEQLKRKLQFFQSKVKEAVGVVKPYFGSESGAIGAIEAIRELELLSNLDINV 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2621025 2623987 + Conep19aG0033800.1 Cone19ag0327 458764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0327 374 SMART h15plus2 45 112 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone19ag0327 374 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 47 117 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone19ag0327 374 Gene3D - 44 125 IPR036388 -
Cone19ag0327 374 SMART AT_hook_2 284 296 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 188 200 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 297 309 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 165 177 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 210 222 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 256 268 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 SMART AT_hook_2 134 146 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 MobiDBLite consensus disorder prediction 1 29 - -
Cone19ag0327 374 MobiDBLite consensus disorder prediction 281 307 - -
Cone19ag0327 374 FunFam Histone H1.2 44 125 - -
Cone19ag0327 374 PRINTS AT-hook-like domain signature 295 305 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 PRINTS AT-hook-like domain signature 208 219 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 PRINTS AT-hook-like domain signature 188 198 IPR017956 GO:0003677(InterPro)
Cone19ag0327 374 PANTHER HISTONE H1 41 319 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cone19ag0327 374 CDD H15 45 116 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone19ag0327 374 MobiDBLite consensus disorder prediction 116 227 - -
Cone19ag0327 374 MobiDBLite consensus disorder prediction 1 50 - -
Cone19ag0327 374 SUPERFAMILY Winged helix DNA-binding domain 44 118 IPR036390 -
Cone19ag0327 374 Pfam linker histone H1 and H5 family 48 110 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0327 Cone-Chr19:2621025 Cone9ag0412 Cone-Chr9:1910825 4.41E-22 dispersed
Cone13ag0322 Cone-Chr13:2673651 Cone19ag0327 Cone-Chr19:2621025 4.00E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017234 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6