Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0331 ATGAGTGCTAGAGAGGATCCAGAGGCAGTTCAGATTGAATCCGTCAAGCAAATCAGTTTGGGGACTTGTGATCCTCATAATACTCCTGCTGAAGTTATCGCCTTTCGATACTGGAATTACAATTCTCTTAGCTATGATGACAAGATCATGGATGGCTTTTATGATCTTTATGGAATCTTGAATGAGTCCAACTCAGAAAGAATGCCTTCCTTAGTTGATCTCCAAGGAACATTGGTCTCAGAGGGTGTAATCTGGGAAGCAGTTCTGGTCAATCGAGCTGCTGATGAAAAATTATTGAAAATTGAACAGTCAGCTTTGGAGATGGCCATAAAGTCAAGGCCTGATTCTCTGGTTTGTGCAGATAGTAATTTGGTGCAAAAACTTGCTCTTTTAGTTTCTAATCACATGGGAGGCCCAGTTGGGAACCCAGAGAAAATGGCAAGACAATGGCGAAGTCATAGTTATGGTTTGAAAGTGATGCTTGGTAGCATGGTTCTGCCACTTGGTTCTCTCACAATTGGCTTCTCCCGCCATCGTGCATTGTTATTTAAGCTTTTGGCTGATGGTGTGGGCATTCCATGCCGGCTAGTCAAAGGACAACAATACACAGGTTCCGATAATGTGGCAATAAACTTTGTGAAGCTTGATGATGGGAGGGAATATATTGTTGATCTAATGGCAGATCCAGGGACTCTCATTCCATCTGATGTTGCTGGATCACGTATTGAGTATGACGAATCTTTGTTTTCACCCAGTCCATTATCTAGGGACATTGATTCCTATCAAATGGCCTCTTCAAGCAGTGGGGTTGGGAGTTCATATGACGAAAATTCTGATTTTGGGGCATCAGATAGGAGATCAAGATTCAGTAATTTTGCTACTGCAGGAAAAGAATCCGAAGAAAACGAAGAATATATTTTTTCGAAAAGATCTTCAGATAATGTGGAGAGAGTTTTATTACAAGACCTTCCCAGTAAGCCTAATTTCCTGTTCAGACATGGAAGATCTCCTTCTTGGACAGAAGGTGTTAGCTCACCTGCCGTACATAGAATGAAAGTAAAAGATGCTTCACAGTACATGATTGATGCAGCCAAAGGGAACCCACAATTCGCCCAAAAACTTCATGACGCTTTGCTCGAAAGTGGTCTAGTAGCTCCCCCTGACTTGTTCACCGAAATGTACTCCAGAATTTCAAATGTCGAATCAAACCCCCAAAACAAAGGCAACGAGGACATCACAAAAGGGATTGCATCCCTGCAAATCAAAGGTCAAGATGATTCTTGTCCCATGCATGCTTTGCCTCCCTTACCTCCAAAAATGCATTTGAAACCAAGTCTTCTGTCTGAACAACCACAAGACCTTACTCCTGGAAAAAATTTAAAAAATGTTCCGGTGGCAGCCGCCGCCGCTGCAGCTGCTGTTGTTGCATCATCGATGGTAGTTGCAGCGGCAAAGTCGAGCTCCAACGCAAATCTTCAACTTCCGGTGGCAGCTGCTGCGGCAGTTGTGGCAACGACGGCAGCTGTTAGTAGGCAGTATGAGTGGAGTGAAGGAGATGTAGATAGTGGTAGTGGAGGTCATGGAAATGATTCTCTTGGCGGGAATTCGGAAGGAGATAGGCTATCATATGGATCCACGGGTAATCGTAGCACTAAGTCTGATGTTGGACTCGATGATGTGGCAGAGTGTGAGATTCAGTGGGAGGATATCACGTTGGGTGAACGAATTGGACTTGGGTCTTATGGGGAGGTATATCATGGAGCTTGGCTTGGAACTGAGGTTGCAGTGAAAAGATTTCTGGATCAAGATATTACTGGTGAATTGCTGGAAGAATTCAAAAGTGAGGTCCGAATAATGAAAAGGCTCAGGCATCCAAATATAGTTCTCTTCATGGGAGCAGTAACACATACACCAAATTTTTCCATCGTGACAGAATTTCTTCCCAGAGGTAGCTTATACAGGATAATTCATCGGCCTAACAATCAACTAGATGAGCGGAGGCGTTTGAGGATGGCCCTTGATGCAGCTCGTGGAATGAATTATTTGCACAACTGCACTCCAGTTATAGTTCACCGTGATTTGAAGTCTCCAAATCTCCTTGTTGACAAAAACTGGGTAGTAAAGGTATGCGATTTTGGGCTATCAAGAATAAAGTATAGTACATTCCTCTCTTCAAGATCAGCTGCAGGAACAGCTGAGTGGATGGCACCGGAAGTGTTAAGAAATGAACCTTTAGATGAAAAATGTGATGTGTACAGTTTTGGGGTAATATTGTGGGAGCTGTGTACAATGCAACAACCATGGGGAGGAATGAATCCGATGCAAGTTGTTGGTGCGGTTGGATTTCAGCATCGTCGTCTTGACATTCCAGAAGATACTGACCCAGCCATTGCAGATATTATTCGGAAATGCTGGCAGACAGATCCGAAACTGAGACCGACATTTGCCGAGATCATGGCAGCTCTAAAGCCATTGCAGAAGCCTATAATGGCTTCCCAAGCTTCACGACCAAGCGCTCAAACGGGCAGTGGGAATGAAAATGCTCAATAA 2550 43.88 MSAREDPEAVQIESVKQISLGTCDPHNTPAEVIAFRYWNYNSLSYDDKIMDGFYDLYGILNESNSERMPSLVDLQGTLVSEGVIWEAVLVNRAADEKLLKIEQSALEMAIKSRPDSLVCADSNLVQKLALLVSNHMGGPVGNPEKMARQWRSHSYGLKVMLGSMVLPLGSLTIGFSRHRALLFKLLADGVGIPCRLVKGQQYTGSDNVAINFVKLDDGREYIVDLMADPGTLIPSDVAGSRIEYDESLFSPSPLSRDIDSYQMASSSSGVGSSYDENSDFGASDRRSRFSNFATAGKESEENEEYIFSKRSSDNVERVLLQDLPSKPNFLFRHGRSPSWTEGVSSPAVHRMKVKDASQYMIDAAKGNPQFAQKLHDALLESGLVAPPDLFTEMYSRISNVESNPQNKGNEDITKGIASLQIKGQDDSCPMHALPPLPPKMHLKPSLLSEQPQDLTPGKNLKNVPVAAAAAAAAVVASSMVVAAAKSSSNANLQLPVAAAAAVVATTAAVSRQYEWSEGDVDSGSGGHGNDSLGGNSEGDRLSYGSTGNRSTKSDVGLDDVAECEIQWEDITLGERIGLGSYGEVYHGAWLGTEVAVKRFLDQDITGELLEEFKSEVRIMKRLRHPNIVLFMGAVTHTPNFSIVTEFLPRGSLYRIIHRPNNQLDERRRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRIKYSTFLSSRSAAGTAEWMAPEVLRNEPLDEKCDVYSFGVILWELCTMQQPWGGMNPMQVVGAVGFQHRRLDIPEDTDPAIADIIRKCWQTDPKLRPTFAEIMAALKPLQKPIMASQASRPSAQTGSGNENAQ 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2671450 2680297 - Conep19aG0034200.1 Cone19ag0331 458768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0331 849 ProSitePatterns Protein kinases ATP-binding region signature. 576 597 IPR017441 GO:0005524(InterPro)
Cone19ag0331 849 FunFam Serine/threonine-protein kinase CTR1 649 832 - -
Cone19ag0331 849 MobiDBLite consensus disorder prediction 439 458 - -
Cone19ag0331 849 MobiDBLite consensus disorder prediction 263 282 - -
Cone19ag0331 849 MobiDBLite consensus disorder prediction 528 553 - -
Cone19ag0331 849 CDD STKc_MAP3K-like 576 822 - -
Cone19ag0331 849 SUPERFAMILY Protein kinase-like (PK-like) 557 821 IPR011009 -
Cone19ag0331 849 MobiDBLite consensus disorder prediction 829 849 - -
Cone19ag0331 849 FunFam Serine/threonine-protein kinase isoform 1 561 648 - -
Cone19ag0331 849 SMART serkin_6 570 830 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 MobiDBLite consensus disorder prediction 517 553 - -
Cone19ag0331 849 MobiDBLite consensus disorder prediction 831 849 - -
Cone19ag0331 849 Pfam Ethylene-responsive protein kinase Le-CTR1 30 233 - -
Cone19ag0331 849 PANTHER SERINE-THREONINE PROTEIN KINASE 79 823 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone19ag0331 849 Gene3D Transferase(Phosphotransferase) domain 1 649 834 - -
Cone19ag0331 849 Pfam Protein tyrosine and serine/threonine kinase 570 822 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 ProSiteProfiles Protein kinase domain profile. 570 830 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 PRINTS Tyrosine kinase catalytic domain signature 683 701 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 PRINTS Tyrosine kinase catalytic domain signature 644 657 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 PRINTS Tyrosine kinase catalytic domain signature 749 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 PRINTS Tyrosine kinase catalytic domain signature 793 815 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 PRINTS Tyrosine kinase catalytic domain signature 730 740 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0331 849 Gene3D Phosphorylase Kinase; domain 1 563 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1367 Cone-Chr10:10649005 Cone19ag0331 Cone-Chr19:2671450 5.56E-76 dispersed
Cone14ag0716 Cone-Chr14:3916480 Cone19ag0331 Cone-Chr19:2671450 4.47E-106 dispersed
Cone19ag0331 Cone-Chr19:2671450 Cone4ag1661 Cone-Chr4:12479695 1.14E-215 dispersed
Cone19ag0331 Cone-Chr19:2671450 Cone16ag0342 Cone-Chr16:4435812 3.10e-310 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82374 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0331 - - - 0.0