Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0334 ATGGCGTCTAATGCTGCGAATCTATGGGTTTTGCTCGGGTTGGGTTTGGCTGGGATTCTTCTCATGACGAAGAAACTTAAGAAAACAATCAAGGAGGATTTTGGCGCGTTTATTGAGAAGCTTCAATTGCTTCCTCCTCCTCAAGCTGCTCCTCCTAAAGCTCCTCATCCTCTCACCGGTCTCACCTTTGCCGTTTCAGACGTATTTGAAATTGAAGGACGTGTGACTGGGTTTGGTCATCCAGACTGGGCAAGAACACATGATGCAGCTTCTTGGACCTCTCCGGTAGTTTCTTCTCTTGTTGAAGGAGGAGCCACTTGCGTTGGGAAAACTGTCGTGGATGAATTAGGAATCAGTATCAGTGGAGACAATAAACATTATGGTACACCCACCAATCCTACATCACCTTCAAGAGTTCCAGGGGGAGCATCTAGTGGAGCTGCTGTGGCTGTAGCTGCTAATCTTGTGGACTTTGCTCTGGGTATCGATACTGTTGGTGGTGTGAGAGTACCTGCTGGGTTTTGTGGCATTTTGGGATTTAGACCTTCACATGGGTCTGTTTCTCATGCGGGAATTATACCTGTTTCAACAAGTCTTGATACTGTTGGATTGTTCGCTAAGGACCCCAAAATTCTCCGGCGTGTCAGCCATGTGCTACTTCGAATTCCATATTCTGTTCAGCACAATCCTCGGCAAATCATTATTGCTGATGATTGCTTTCAACTACTAAAAATACCTGTAGATAGGGTTGCTCAAGTGGTGATCAAATCGACCGAGAAGCTTTTTGGAAGACAAGTATTGAAGCATGAAAATCTTGAGAACTTTTTCAGTTCCAAGGTTCCCAAGTTGAAAGAGGTCATCGATAAAGACAGAAATGGTGAATTGAAGTCATCTTCAATTAGAGTTCTAGCAAATATCATGCAAATTCTTCAAAGACATGAATTCAAACGTGATCATGGAGAATGGATTGACTCAGTAAAGCCTGTTTTGGATCCGGCTGTTTCAGTCCTGTTGCATCAGATTGTGGAGACATCAGATACAGAGATTGATAAATACAAAGCAGTTAGGAATGAAATACGTGCAGCTGTTAACTCTCTTTTGAAGGATGACGGAATTCTAGTGATTCCAACTACTGTTGATTCTCCCCCAAAACTTGGTGGGAAAGAGATACTGTCTGAGGACTACCAAAGCCGTGCGTTCAGTCTGTTGAGTATTGCTAGTGTTGCAGTACCATTGGGACATCACGACAAATATCTGGTATCTGTCTCCTTCATTGCCAGGCATGGGGCTGATCGCTTTTTACTAGATACAGTGCAAGCAATGTATACATCTCTGCAAGAGGAAGCTGAGGTTGCTTCCAAATCCAAATTCTCGAGAAATGCCATCAGTCAGGAACAATCTGCCGAAGTTGCTAAAGAAAAGGGTAACCAAGCATTTAAAGAAAAACAGTGGGAGAAGGCTATTGGATTCTATACAGAAGCTATCAAACTTAGCGGCAAAAATGCAATGTATTACAGTAATCGTGCTGCAGCATATTTGGAATTGGCACGATTCCACCAGGCTGAGGCAGACAGTAGTAAAGCTATTGACCTTGATAAAAAGAATGTTAAAGCGTATTTAAGAAGAGGCACGGCAAGAGAGATGCTTGGCTATTATAAGGAGGCAATTGAAGATTTTAGCCACGCGCTTGTCCTTGAACCAACAAATAAAAGGGCATCCATGTCTGCTGAAAGACTAAGAAAGGTATTCGCCAGTTGA 1758 43.12 MASNAANLWVLLGLGLAGILLMTKKLKKTIKEDFGAFIEKLQLLPPPQAAPPKAPHPLTGLTFAVSDVFEIEGRVTGFGHPDWARTHDAASWTSPVVSSLVEGGATCVGKTVVDELGISISGDNKHYGTPTNPTSPSRVPGGASSGAAVAVAANLVDFALGIDTVGGVRVPAGFCGILGFRPSHGSVSHAGIIPVSTSLDTVGLFAKDPKILRRVSHVLLRIPYSVQHNPRQIIIADDCFQLLKIPVDRVAQVVIKSTEKLFGRQVLKHENLENFFSSKVPKLKEVIDKDRNGELKSSSIRVLANIMQILQRHEFKRDHGEWIDSVKPVLDPAVSVLLHQIVETSDTEIDKYKAVRNEIRAAVNSLLKDDGILVIPTTVDSPPKLGGKEILSEDYQSRAFSLLSIASVAVPLGHHDKYLVSVSFIARHGADRFLLDTVQAMYTSLQEEAEVASKSKFSRNAISQEQSAEVAKEKGNQAFKEKQWEKAIGFYTEAIKLSGKNAMYYSNRAAAYLELARFHQAEADSSKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEDFSHALVLEPTNKRASMSAERLRKVFAS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2701092 2710813 + Conep19aG0034500.1 Cone19ag0334 458771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0334 585 Pfam Amidase 53 218 IPR023631 -
Cone19ag0334 585 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 Gene3D Amidase signature (AS) domain 31 445 IPR036928 -
Cone19ag0334 585 Pfam Tetratricopeptide repeat 537 568 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 MobiDBLite consensus disorder prediction 123 143 - -
Cone19ag0334 585 SUPERFAMILY Amidase signature (AS) enzymes 27 441 IPR036928 -
Cone19ag0334 585 SUPERFAMILY TPR-like 467 573 IPR011990 GO:0005515(InterPro)
Cone19ag0334 585 ProSiteProfiles TPR repeat region circular profile. 536 569 - -
Cone19ag0334 585 ProSiteProfiles TPR repeat profile. 536 569 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 FunFam Outer envelope protein 64, mitochondrial 44 445 - -
Cone19ag0334 585 SMART tpr_5 536 569 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 SMART tpr_5 468 501 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 SMART tpr_5 502 535 IPR019734 GO:0005515(InterPro)
Cone19ag0334 585 MobiDBLite consensus disorder prediction 124 141 - -
Cone19ag0334 585 Gene3D Tetratricopeptide repeat domain 452 567 IPR011990 GO:0005515(InterPro)
Cone19ag0334 585 PANTHER AMIDASE 1 5 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0334 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0334 Cone-Chr19:2701092 Cone8ag1007 Cone-Chr8:9395530 3.46E-171 dispersed
Cone13ag0318 Cone-Chr13:2612913 Cone19ag0334 Cone-Chr19:2701092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42