Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0337 ATGGGTCGGGATTACAGTTCCACTTCCTCTCGCTCCTCTAAACCCCATCCCTCGGCCAAAAACCCTTCTCATTTCCAACTTCAAGCTCAACGAAAGCGGATAACAATGGCAGTTTTCAAATTCTTTCATTTGAGCTCTGCACTGGCCCGCGCTAGTCCCAGATTTCACTCCCCTATCCTCTTCTCCAAACCATGTCCTTCCAAATCCCTGCGCTTCGTCCCGTACAGCTCCTCCTCCCCTGTGCTTGATACCATAACCAGCGGCGGTGACACAGAAGCTTCTGTTTCTTCTTCTCCTTCTCAACATCATCCCTGGCCTGAATGGGTGACCTTCGTCGACTCGTTGAAGACCAAGGGTTACTTTGCCGAATCCACTCCGAAAGATGGAGACGAGGATGACGATGGCGATGGCGATGGTGCTGTTGCCTCTGAGAGTGTTTACAATGACATGAATGTCTTGAAGGATGCTTGCCTCAGCTTTGCTCGTGACCGCTACGATGTTTTCAAATCATTGTCCTCAGAAGATATCAAAACTGTTGTCCAGGGGGGATGTCCTAATCTTTTCCGGAAAGCTGTCAACTCAGCTAAAAGGTTGAGAGCCTATTTGCATCAGGATGAAGGGGATGTTTGTGGTGCTTGCAATCTGAGAGGTTCTTGTGATAGAGCTTATGTGATTTTGAAGGAATCAGAAGCAGGACCAAGAACGGTGGATATAGTGCGTCTATTGTTATTCTATGCACTAGATCCACTAGTTATTTCGGAAGGACATAAACCTCCTGGTAGAGACCTTGTTGAATCATCTGCAAGGAAATTGCTTTATGAGTTAACTGAGGTTAGTGGAAAATCCCGTGATCCAGCATTACCAAAGCCTGATCTTAAAGCTCCTGTACGGAAAGAAAAGTCAAAGAGATTGGTTGTTGAGAGCATGTCCGATGATGTTGAGATGAAGAGGGGAGATTGGATGTGTCATAAGTGCAATTTCTTAAATTTTCAAAGAAACATTCGGTGTTTGAAATGTAATGGAGACGGCCCCAAAAAAGTTGGGGCAGATGGTATTGAAATGAAGATTGGGGATTGGACCTGTCCTGAATGTGACTTCATGAACTTTTCTAGAAATCGTCGTTGCTTGAAGTGCGAAGCAGAGGGGCCTGTAAAGGTTTCTGGAGATAAAGTGGAGATGAAAAAAGGAGATTGGAACTGCCCAAAATGTGATTTCATGAATTTTGCTAGCAATAAGAAGTGCTTGCGATGTAGAGAGCATAGGCCCAAGAGACAACTAAATCCTGGTGAATGGGAATGCCCCTCATGTGATTTCCTAAATTACAAAAAGAACATGGCTTGCCTCAAGTGTAACTGTAAACGACCCAAGGAAGGGATTAGTAATGAGTATGACGAACAGCTATGGAGGCGACCTGGCCATGAATAG 1425 45.12 MGRDYSSTSSRSSKPHPSAKNPSHFQLQAQRKRITMAVFKFFHLSSALARASPRFHSPILFSKPCPSKSLRFVPYSSSSPVLDTITSGGDTEASVSSSPSQHHPWPEWVTFVDSLKTKGYFAESTPKDGDEDDDGDGDGAVASESVYNDMNVLKDACLSFARDRYDVFKSLSSEDIKTVVQGGCPNLFRKAVNSAKRLRAYLHQDEGDVCGACNLRGSCDRAYVILKESEAGPRTVDIVRLLLFYALDPLVISEGHKPPGRDLVESSARKLLYELTEVSGKSRDPALPKPDLKAPVRKEKSKRLVVESMSDDVEMKRGDWMCHKCNFLNFQRNIRCLKCNGDGPKKVGADGIEMKIGDWTCPECDFMNFSRNRRCLKCEAEGPVKVSGDKVEMKKGDWNCPKCDFMNFASNKKCLRCREHRPKRQLNPGEWECPSCDFLNYKKNMACLKCNCKRPKEGISNEYDEQLWRRPGHE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2731121 2736058 + Conep19aG0034800.1 Cone19ag0337 458774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0337 474 MobiDBLite consensus disorder prediction 1 26 - -
Cone19ag0337 474 SUPERFAMILY Ran binding protein zinc finger-like 348 381 IPR036443 -
Cone19ag0337 474 ProSitePatterns Zinc finger RanBP2-type signature. 398 417 IPR001876 -
Cone19ag0337 474 Gene3D - 307 346 - -
Cone19ag0337 474 Gene3D - 349 384 - -
Cone19ag0337 474 Gene3D - 425 458 - -
Cone19ag0337 474 Gene3D - 385 424 - -
Cone19ag0337 474 ProSiteProfiles Zinc finger RanBP2 type profile. 355 384 IPR001876 -
Cone19ag0337 474 ProSitePatterns Zinc finger RanBP2-type signature. 431 450 IPR001876 -
Cone19ag0337 474 ProSiteProfiles Zinc finger RanBP2 type profile. 316 345 IPR001876 -
Cone19ag0337 474 SUPERFAMILY Ran binding protein zinc finger-like 387 423 IPR036443 -
Cone19ag0337 474 ProSiteProfiles Zinc finger RanBP2 type profile. 427 456 IPR001876 -
Cone19ag0337 474 MobiDBLite consensus disorder prediction 122 141 - -
Cone19ag0337 474 ProSiteProfiles Zinc finger RanBP2 type profile. 394 423 IPR001876 -
Cone19ag0337 474 SMART zf_4 396 420 IPR001876 -
Cone19ag0337 474 SMART zf_4 357 381 IPR001876 -
Cone19ag0337 474 SMART zf_4 318 342 IPR001876 -
Cone19ag0337 474 SMART zf_4 429 453 IPR001876 -
Cone19ag0337 474 PANTHER ZINC FINGER PROTEIN 345 383 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Cone19ag0337 474 Pfam Zn-finger in Ran binding protein and others 355 383 IPR001876 -
Cone19ag0337 474 Pfam Zn-finger in Ran binding protein and others 317 342 IPR001876 -
Cone19ag0337 474 Pfam Zn-finger in Ran binding protein and others 394 418 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0337 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1067 Cone-Chr14:8983154 Cone19ag0337 Cone-Chr19:2731121 1.74E-25 dispersed
Cone15ag1056 Cone-Chr15:8754613 Cone19ag0337 Cone-Chr19:2731121 5.64E-24 dispersed
Cone19ag0337 Cone-Chr19:2731121 Cone6ag0370 Cone-Chr6:1807509 6.36E-53 dispersed
Cone19ag0337 Cone-Chr19:2731121 Cone10ag0765 Cone-Chr10:3866575 1.16E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37