Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0343 ATGGCGACGCCGTTGGCCGGTATGCAACACAGGGACGGAGGTGGAGGAGTTGCGGTGCTGTCGAATTCTGTGAATAAGGTGGATTCATCGTCGTCTTCGAATGGCTGTTTGAGGAGCTCCGAACCTAAGTCTCCGATTCTGATTTTCTTATTATTTCACAAAGCGATTCGCTATGAGCTCGATGCGCTTCATAAGCTGGCCATGGCGTTCGCTACTGGTCAGAGAACGGATATCGAGCCTCTTCTGGACCGCTACCATTTTCTGAGATCGATTTGTAAACATCACTCCAATGCTGAAGACGAGGTAATTTTTCCAGCACTTGATATACGTGTGAAGAATGTGGCAAAAACATACTCTCTTGAACATAAGGGTGAAAGAAATCTCTTTCATCATCTTTTCGAGCTTCTCAAATCAGATACACAAAGTGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGTACAGGAGCTCTACAGACATCAATTAGCCAGCACATGGCTAAGGAAGAAGAACAGGTCTTTCCCTTGCTTATTGAGAAGTTCTCTCTCGAAGAGCTGGCATATCTGGTTTGGCAGTTCTTGTGCAGTATTCCCGTGAATATGTTGGCTGAATTCCTTCCCTGGCTTTCATCATCCATTTCATCTGATGAATATCAGGATCTGCGAAAATGTATTAGCAAGATAGTTCCTAAAGAAAAACTTCTTCAAAAGGTCATATTCACATGGATGGAACAAAGAGGCAGTGCAAATATGACTGAAAGTTGTATAGATGACAATCAGGTCCGACGTCTTACAGATTCTACAGCTAGCACATCAGACCATCAAATAGAAAAAGGACAGTGTCCATGTGAATTGACTGGTACTGGAAAAAGGAAATATCTGGATTCAAATACTGATATATCAGATACCATGGAGACACATCCAATTAATGAAATATTGCTATGGCATAAGGCTATCAAAAGAGAGTTAAATGAGATAGCAAAGGAGGCTAGGAAGATACAGCATTGTGGAAATTTTAGTAATCTATCGGCCTTTAACGATAGGTTACAATTCATTGCTGAAGTCTGTATCTTTCACAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGGGAATTCTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAGTTCAATGAGTTTAGGTGCTTGATTGAAAGTATTCAGAGTGAAGGAGCAGTGTCTTCTTCTGCTGCAGAGTTTTACGTGAAGCTGTGTACACACGCTGATCAAATAATGGATACCATACAGAGGCACTTCTACAATGAGGAAATTCAGGTTCTCCCACTTGCTCAAAAGCATTTTAGCTTCAAAAGACAGCGCGAACTTTTGTATCGAAGCTTGTGCATGATGCCACTGAAATTGATTGAGCGTGTCTTGCCCTGGCTAGTAGAATCATTAAGTGATGATGAAGCCAGAAATTTCCTCAAAAACATGCAATTGGCAGCCCCAGCACCGGATAGTGCTCTGGTGACACTGTTTTCTGGTTGGGCTTGCAAGGCTCGTAAAAAAGGTTTATGCTTGTCTGTGAAGGCCAGTGGTTGCTGTCCTGTTAAAAGGTTTACTGATATTGAAGACAATTCCGTTCGATCGATCTGTTCATCTGATTCTGCATTGTATGAAAGAAACCCTTCAATCTCAGGTCAGACAAACAATGTTGAAAGGCCAGTGAAACGAAATGTCTCAGCATCATGTTTGGGAGTTAACACCAATAATCTGGGGTTGAGTTCTCTTTTTACAATCAAATCATTGCGCTCTGTATCTCCCAGCTCTTGCGTGCCGTCACTTAATTCCAGCCTTTTTTCATGGGAAACAGATTACAGCTTATCTGATGCTGGGTCTGCCGGACGACCGATTGATACTATTTTTAAATTCCACAAAGCCATACGCAAAGACTTGGAGTATTTAGATGTTGAATCCGGAAAGCTTAGTGAATGTGATGGGACATCCCTTCGGCAATTCATTGGAAGATTTCGCCTGCTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATTGTGTTTCCTGCATTGGAATCCAAAGAGACGCTGCACAATGTTAGTCACTCGTACACATTGGACCATAAGCAGGAGGAAAAATTATTTGAAGATATTTCCCGTGTTCTCTCTGAACTGGCAGTTCTCCATGAAAATTTGCAAGAGTCCACTATGGAGGGTAGTGAATTTACTGGGAAGTATAATGAACTAGCTACAAAGCTGCAGGGAATGTGCAAATCTATAAGAGTCACCTTAGATCAGCATATTTTTAGGGAAGAACTCGAGTTATGGCCATTGTTTGGTAGACACTTCTCGGTGGAGGAACAAGACAAGATTGTGGGCCGCATAATTGGAACAACAGGTGCAGAAGTTCTCCAATCAATGTTACCATGGGTTACTTCTGCTCTTACACAGGATGAACAGAATAAATTGATGGATACATGGAAGCAAGCCACCAAAAACACTATGTTCAATGAATGGCTCAATGAATGCTGGAAAGGAACTGCAGCATCTACTGTACAGATTGAAACATTAGAAGTTAGTGGTACTGAGTTTCAAGAAAGCTTGGAACAGAATGACCAGATGTTCAAGCCTGGCTGGAAGGATATTTTCCGTATGAATCAAAATGAGCTTGAATCAGAGATCAGAAAGGTTTATAGGGATTTGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCTCAGCAGAAGTTACCTCAAGAAGTAGTAGGGGAGACTTCCAACAGTGAGGATATAGCAGGCCGCTCGCCATCATTTCGTGAGCTTGAGAAAGAAGTGTTCGGATGCGAGCATTACAAAAGAAACTGCAAACTTCGTGCTGCTTGCTGTGGAAAATTATTTGCATGTCGGTTTTGCCATGATAATGTCAGTGATCACTTGATGGACAGGAAAGCAGCATCAGAAATGATGTGTATGAACTGCCTAACTGTTCAGGCAGTTGGGCCTATATGCATGACACCTTCATGCAATGGACTATCGATGGCAAAGTACTTTTGCAGTATTTGCAAATTTTTTGACGATGAAAGGAATGTATATCATTGTCCATTTTGCAACTTATGTCGTGTTGGGAAGGGTCTTGGCATTGATTACTTTCATTGCATGACTTGCAATTGTTGCCTGGGGATAAAGCTTGTGAACCACAAGTGCCTGGAGAAAAGCTTGGAAACAAACTGCCCTATCTGCTGCGACTTCCTCTTCACCTCCAGTGCAACAGTCAGAGCTCTACCTTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCCTACACGTGTAGCCATTATACCTGTCCAATATGCAGCAAATCTTTAGGGGATATGGCGGTTTATTTTGGCATGCTTGATGCCCTCTTGGCTGCAGAGGAGCTACCGGAAGAGTACAGGGATCGTTGTCAGGATATACTTTGCAATGACTGTGACCGGAAGGGATGGTCAAGATTCCACTGGCTATATCACAAGTGTGGGTCCTGCGGCTCATACAACACCCGTGTGATCAAGAATGAGACCGCAATTGCGGACTGTTCAGCATCAAACCAATGA 3618 42.73 MATPLAGMQHRDGGGGVAVLSNSVNKVDSSSSSNGCLRSSEPKSPILIFLLFHKAIRYELDALHKLAMAFATGQRTDIEPLLDRYHFLRSICKHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGERNLFHHLFELLKSDTQSDESFPRELASCTGALQTSISQHMAKEEEQVFPLLIEKFSLEELAYLVWQFLCSIPVNMLAEFLPWLSSSISSDEYQDLRKCISKIVPKEKLLQKVIFTWMEQRGSANMTESCIDDNQVRRLTDSTASTSDHQIEKGQCPCELTGTGKRKYLDSNTDISDTMETHPINEILLWHKAIKRELNEIAKEARKIQHCGNFSNLSAFNDRLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIESIQSEGAVSSSAAEFYVKLCTHADQIMDTIQRHFYNEEIQVLPLAQKHFSFKRQRELLYRSLCMMPLKLIERVLPWLVESLSDDEARNFLKNMQLAAPAPDSALVTLFSGWACKARKKGLCLSVKASGCCPVKRFTDIEDNSVRSICSSDSALYERNPSISGQTNNVERPVKRNVSASCLGVNTNNLGLSSLFTIKSLRSVSPSSCVPSLNSSLFSWETDYSLSDAGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSECDGTSLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISRVLSELAVLHENLQESTMEGSEFTGKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKLMDTWKQATKNTMFNEWLNECWKGTAASTVQIETLEVSGTEFQESLEQNDQMFKPGWKDIFRMNQNELESEIRKVYRDLTLDPRRKAYLVQNLMTSRWIAAQQKLPQEVVGETSNSEDIAGRSPSFRELEKEVFGCEHYKRNCKLRAACCGKLFACRFCHDNVSDHLMDRKAASEMMCMNCLTVQAVGPICMTPSCNGLSMAKYFCSICKFFDDERNVYHCPFCNLCRVGKGLGIDYFHCMTCNCCLGIKLVNHKCLEKSLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCDRKGWSRFHWLYHKCGSCGSYNTRVIKNETAIADCSASNQ 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2797263 2806220 - Conep19aG0035500.1 Cone19ag0343 458780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0343 1205 Pfam Ring finger domain 1084 1126 IPR001841 -
Cone19ag0343 1205 FunFam Zinc finger protein BRUTUS 622 840 - -
Cone19ag0343 1205 CDD RING-H2_Pirh2-like 1084 1127 - -
Cone19ag0343 1205 Gene3D nmb1532 protein domain like 622 868 - -
Cone19ag0343 1205 Pfam Zinc-ribbon 1132 1189 IPR039512 -
Cone19ag0343 1205 ProSiteProfiles Zinc finger RING-type profile. 1085 1127 IPR001841 -
Cone19ag0343 1205 Pfam Hemerythrin HHE cation binding domain 49 176 IPR012312 -
Cone19ag0343 1205 Pfam Hemerythrin HHE cation binding domain 307 440 IPR012312 -
Cone19ag0343 1205 Pfam Hemerythrin HHE cation binding domain 627 776 IPR012312 -
Cone19ag0343 1205 CDD Hr-like 310 438 - -
Cone19ag0343 1205 ProSiteProfiles Zinc finger CTCHY-type profile. 1021 1084 IPR017921 -
Cone19ag0343 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1078 1129 IPR013083 -
Cone19ag0343 1205 ProSiteProfiles Zinc finger CHY-type profile. 949 1018 IPR008913 GO:0008270(InterPro)
Cone19ag0343 1205 CDD Hr-like 629 775 - -
Cone19ag0343 1205 Gene3D - 1156 1199 - -
Cone19ag0343 1205 CDD Hr-like 48 174 - -
Cone19ag0343 1205 SMART ring_2 1085 1126 IPR001841 -
Cone19ag0343 1205 SUPERFAMILY RING/U-box 1084 1130 - -
Cone19ag0343 1205 SUPERFAMILY Zinc hairpin stack 1022 1078 IPR037275 -
Cone19ag0343 1205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 662 1191 - -
Cone19ag0343 1205 Gene3D nmb1532 protein domain like 311 456 - -
Cone19ag0343 1205 Gene3D nmb1532 protein domain like 44 193 - -
Cone19ag0343 1205 Pfam CHY zinc finger 956 1024 IPR008913 GO:0008270(InterPro)
Cone19ag0343 1205 FunFam Zinc finger protein-related isoform 1 1080 1129 - -
Cone19ag0343 1205 SUPERFAMILY CHY zinc finger-like 950 1012 IPR037274 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0096 Cone-Chr13:585403 Cone19ag0343 Cone-Chr19:2797263 3.65E-252 dispersed
Cone19ag0099 Cone-Chr19:559631 Cone19ag0343 Cone-Chr19:2797263 3.38E-258 dispersed
Cone19ag0343 Cone-Chr19:2797263 Cone1ag0496 Cone-Chr1:4835303 1.01E-48 dispersed
Cone13ag0306 Cone-Chr13:2395636 Cone19ag0343 Cone-Chr19:2797263 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0343 K16276 - csv:101215023 1961.04