Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0368 ATGGTGTTATGGACGGCTACCTCCGAACTGGCCGAGAGTGTTCACTGCACTTTTGCTTCCAGATATGTCCGCACTGCCCTTCCTAAGTTCAAGATGGGAGAGAAATCGATCCCAAAGGAAGCAGCGTACCAAGTAATCCACGATGAGTTGATGCTGGATGGGAATGCCAGGTTGAATCTGGCTTCGTTTGTGACCACCTGGATGGAGCCAGAATGCGATAAGCTCATCCTGGACTCAATCAATAAGAACTACGTCGACATGGATGAGTATCCTGTCACCACTGAGCTTCAGAACCGATGTGTGAATATGATAGCTCACCTCTTTAATGCTCCTGTTGGAGATGATGAAGCAGCAGTTGGTGTGGGAACCGTGGGGTCATCAGAGGCTATAATGCTCGCTGGACTTGCTTTTAAAAGGAAATGGCAGCAGAAGAGAAAAGAAGAGGGAAAACCCTATGACAAACCCAACATAGTTACTGGCGCTAATGTTCAGGTGTGCTGGGAGAAGTTTGCTAGGTACTTTGAGGTTGAGCTAAAGGAAGTAAAGCTTTCCGAGGGATATTATGTGATGGACCCTAAGAAAGCAGTCGAATTGGTCGATGAGAACACTATCTGTGTTGCGGCCATTCTAGGATCAACATTGACAGGAGAGTTTGAAGATGTGAAACTCCTTAATGATCTACTCACTGAGAAGAATAAGGAGACAGGTTGGGACACCCCAATTCATGTTGATGCTGCTAGTGGAGGGTTTATAGCTCCATTCATTTATCCAGACCTCGAATGGGATTTCCGTTTACCATTAGTGAAAAGCATTAATGTCAGCGGTCACAAGTATGGCCTTGTTTATGCTGGTGTTGGCTGGGTTGTATGGAGGGGTAAGAAGGATTTGCCAGATGAGCTCGTGTTTCACATAAACTATCTTGGATCTGATCAACCTACTTTTACCCTCAACTTTTCAAAAGGTTCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGTCTTGGCTTTGAGGGTTACAAGAACATCATGGAGAACTGCAGGGAAAATGCAAGAATTCTAAAGAAAGGACTTGAAAAACTGGGCCGGTTTGAGATCCTCTCCAAAGATATCGGAGTGCCACTTGTAACCTTCTCTCTAAAAGACAGCAGCAAACACACGGTTTTCGAAATAGCGGAGAGTCTAAGGAGGTTTGGCTGGATCGTCCCAGCATATACAATGCCGCCTAACGCAGAACACATTGCTGTGTTAAGGGTGGTGATTAGGGAGGACTTCAGCCGTGGATTGGCCGAGAGACTTATCTCGGATATTGAAATAGTCCTCAAGGAAATAGATGCTTTACCGAGCAGAATCTCTGTCAAGGCTGCTTCTGCGGTCCCAGCTAGTGGTGATGAAGAAACCCATGTGAAGAAGAATGTGAACGAGACTCAACGGGAGATAACTAGTTATTGGAAGAGGTTTGTAGATGGGAGGAAAACAGGGACCTGCTAG 1491 45.34 MVLWTATSELAESVHCTFASRYVRTALPKFKMGEKSIPKEAAYQVIHDELMLDGNARLNLASFVTTWMEPECDKLILDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPVGDDEAAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPKKAVELVDENTICVAAILGSTLTGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRGKKDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCRENARILKKGLEKLGRFEILSKDIGVPLVTFSLKDSSKHTVFEIAESLRRFGWIVPAYTMPPNAEHIAVLRVVIREDFSRGLAERLISDIEIVLKEIDALPSRISVKAASAVPASGDEETHVKKNVNETQREITSYWKRFVDGRKTGTC 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3118052 3123895 - Conep19aG0038100.1 Cone19ag0368 458805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0368 496 FunFam Glutamate decarboxylase 5 65 - -
Cone19ag0368 496 Gene3D - 1 65 - -
Cone19ag0368 496 FunFam Glutamate decarboxylase 66 360 - -
Cone19ag0368 496 CDD DOPA_deC_like 59 438 - -
Cone19ag0368 496 PANTHER GLUTAMATE DECARBOXYLASE 1 492 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cone19ag0368 496 FunFam Glutamate decarboxylase 361 448 - -
Cone19ag0368 496 Gene3D - 66 360 IPR015421 -
Cone19ag0368 496 NCBIfam glutamate decarboxylase 17 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cone19ag0368 496 SUPERFAMILY PLP-dependent transferases 10 444 IPR015424 -
Cone19ag0368 496 Gene3D - 361 448 - -
Cone19ag0368 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 39 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0242 Cone-Chr11:1162359 Cone19ag0368 Cone-Chr19:3118052 3.08E-289 dispersed
Cone13ag0352 Cone-Chr13:3187624 Cone19ag0368 Cone-Chr19:3118052 0 dispersed
Cone19ag0368 Cone-Chr19:3118052 Cone18ag1245 Cone-Chr18:8815301 3.33E-291 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0368 K01580 - cit:102611084 840.106