Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0400 ATGGTCAGTAGGCAGCAACTCTTGCTCACTCTCTTCATCTTGCCACTCACCATCCATGTTTCCTCCACCACCACTCACCAGCACCTCCACCGCCACCGCCGCCGTCTTCTCCACCAACCTTTGTTTCCTTTGGATTCTCCTCCTCCGTCTCATCCTCCGACACTCTCTCCACAAACACAGCCCCAAAAACAACAACCTAAACTCCCATTCTCTTCCGCTTCCTCGTCGTCCACTCCACAGAAACCATTCTTCCCATTTTATCACTCCGCACCTACTCCCCCTGCTCCCACCGCTATCGCCACCTTTCCGGCCAACATTTCTTCCCTTCTTCTCCCGCAAACCACCTCTAAACCTCACCACCACGTCCTCGGCATCTCTCTCGCCGTTTCTTTCCTTTCCGTTGCTCTAATCGCTGGTCTCGTCGGCTTCCTATACTACCGCAAAAACCCTAAATTATCTCCCATCTCTAAACCTACCGGTCCAGACTGTCTCCGCCTCTATCCTCCCAACATCGCAACATCCGACGGCAGCGGAGGTCACAAGCCGCCACCTCACACCACCTCGAACACCAGCGCAGAGTTTCTCTACTTTGGCACGCTAGCAAATTCCAGAGAAATCGGTGAAGAAGAGACAGCAGGGAATTCAAGCAATGCTGCTCTTTCCGCCGAGATATCCACCTCCTCACCTCACCAGAAGATCGGCTCACCGGAGCTCAAACCTCTACCACCTCTTCCTCGCCACAATTTCGTACAAGATTACAGAAACGTCAAACAAGAGGAAGACGATGAAGAAGAAGAAGAAGAATTTTTCTCGCCAAGAGGATCTTCAGGCCGGCAAGAAAACTTGATCCACAACGGATCGAGCTCATGTAGAATGTACCAGAGCGTAGAAGCTGATCATTTTGGAAACCGAAGCTTCAATTCGAGAAGTCCGAGTCCTTCATATCGACTACGCACAAATTCCGTTTCTCCATCGATAACCGTTTCCAACAGTCCATCTCCACCGTCCATTCTAAGTCCGGTCAGCTTGAAATCAAAATCACCAGACTCTCTAATCAGTTTCCCCCTTCCACTACGCCCTCTTCCACCTCGTCCAGTAATACCATCATCTCCACCGTTATCTTCAACCAATCATTCTCCGTCCAGAAACTCTGACGTCTCAGACCTGAAAACAGAATCTCCCACCGTTCCTAATCATTTCGTTCCATTAAGAATACCTCCTCCTCCTCCGCCTCCGCCTCCGCCTCCGCCTCCAGCAGGGTACTGGGAAGTTCCGGCTCAAGTTCCGGCTCATTCCAGTTCTGGGCCACCGGTCTTAACAAGGCCGGTTCTGTTTAAATCGGCCGAGCAATTACCTAGCAATGTAATGATAGAGAAGAATGAGGAAACCCCAAAACCAAAATTGAAGCCGTTGCATTGGGATAAAGTTAGGGCAAGTTCGGACCGGGCTATGGTGTGGGACCAGATCAAATCAAGCTCTTTTCAGTTAGATGAGGAGATGATTGAGTCACTCTTCACGGCGAATAATTGGAATTCGTCGATGAAAGAAAACGGTGGTAGAAGACAGATTCTTCCTTTGCCGATTCAAGAAAACCGTGTTCTTGATCCGAAGAAATCCCAGAACATTGCTATATTGTTAAGAGCGTTGAACGTGACGATTGATGAAGTGTGTGAAGCTCTTCTGGAAGGCAATCCGGATACAATGGGTACCGAACTTCTCGAAAGCTTATTAAAGATGGCACCTACTAAAGAGGAAGAATGGAAACTAAAAGAATTCAAGGACGAATCACCATTCAAGCTTGGCCCAGCTGAGAAATTCCTCAAGGCTGTTCTTGATGTACCTTTTGCATTCAAAAGGATCGATGCTATGCTCTACATTGTCAATTTTGATTCAGAAATTGAGTACCTCAAGAGATCGTTTGAAACTCTACAAATGGCTTGTGATGAACTGAAGAACAGCAGAATGTTCCTGAAACTTCTAGAAGCAGTACTCAAAGCCGGAAACCGCATGAACGTGGGGACCAATCGAGGAGATGCTCATGCCTTTAAGCTTGACACTCTTCTCAAGCTTGTAGACGTAAAGGGCACGGATGGAAAAACTACCCTTCTCCATTTTGTCGTGCAAGAAATCATCCGAGTAGAAGGTTCTAAACTCTCCAACTCCAATAATCAGATCTCAACCGGAGAAACTACTTCTTTAACAGATGATGTCGAGTTTAGAAAGCTTGGCCTCCAAGTCGTCTCAAGTCTAAGTGGAGAGCTATTAAATGTCAAAAAAGCTGCTGCTATGGACTCCGATGTGCTTAGCTCTGAAGCTGGGAAACTTGCTGATGGAATAAAGAAGATCTATGAGGTTGTAAAAATGAATGTAGAGATTGGATCGAAAGAGAGTAAGTTGAAATTCTCGGAGAATATGAATGCGTTTTTGAAGAGGGGGGAGGAAGATATTGTGAGGATACAAGCTCAAGAGAGTGTTGCTCTTTCTATGGTGAAGGAGATAACCGAGTATTTTCACGGAAACTCTGCCAAGGAAGAAGCTCATCCTTTCCGGATTTTCATGGTGGTGAGGGATTTTCTTTCGGTTCTTGATCAGGTGTGTAAGGAAGTTGGGAGGATTAATGAAAGGAGTATGGCTGGTTCGACTAAACAGTTTTCTGTGCTGCCGAGTAGTAACCCAGTTCTTCAACCGGTTTTCCCCGGATTTATGACGGGAAAGCCAAATTATGATTCCTCAGATGATGAAACGTCATCTCTTTCATCTCAGTGA 2766 46.75 MVSRQQLLLTLFILPLTIHVSSTTTHQHLHRHRRRLLHQPLFPLDSPPPSHPPTLSPQTQPQKQQPKLPFSSASSSSTPQKPFFPFYHSAPTPPAPTAIATFPANISSLLLPQTTSKPHHHVLGISLAVSFLSVALIAGLVGFLYYRKNPKLSPISKPTGPDCLRLYPPNIATSDGSGGHKPPPHTTSNTSAEFLYFGTLANSREIGEEETAGNSSNAALSAEISTSSPHQKIGSPELKPLPPLPRHNFVQDYRNVKQEEDDEEEEEEFFSPRGSSGRQENLIHNGSSSCRMYQSVEADHFGNRSFNSRSPSPSYRLRTNSVSPSITVSNSPSPPSILSPVSLKSKSPDSLISFPLPLRPLPPRPVIPSSPPLSSTNHSPSRNSDVSDLKTESPTVPNHFVPLRIPPPPPPPPPPPPPAGYWEVPAQVPAHSSSGPPVLTRPVLFKSAEQLPSNVMIEKNEETPKPKLKPLHWDKVRASSDRAMVWDQIKSSSFQLDEEMIESLFTANNWNSSMKENGGRRQILPLPIQENRVLDPKKSQNIAILLRALNVTIDEVCEALLEGNPDTMGTELLESLLKMAPTKEEEWKLKEFKDESPFKLGPAEKFLKAVLDVPFAFKRIDAMLYIVNFDSEIEYLKRSFETLQMACDELKNSRMFLKLLEAVLKAGNRMNVGTNRGDAHAFKLDTLLKLVDVKGTDGKTTLLHFVVQEIIRVEGSKLSNSNNQISTGETTSLTDDVEFRKLGLQVVSSLSGELLNVKKAAAMDSDVLSSEAGKLADGIKKIYEVVKMNVEIGSKESKLKFSENMNAFLKRGEEDIVRIQAQESVALSMVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSVLDQVCKEVGRINERSMAGSTKQFSVLPSSNPVLQPVFPGFMTGKPNYDSSDDETSSLSSQ 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3372812 3376998 - Conep19aG0041300.1 Cone19ag0400 458837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0400 921 SMART it6_source 458 877 IPR015425 -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 207 284 - -
Cone19ag0400 921 Pfam Formin Homology 2 Domain 459 862 IPR015425 -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 355 370 - -
Cone19ag0400 921 PANTHER FORMIN-RELATED 30 914 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cone19ag0400 921 MobiDBLite consensus disorder prediction 40 87 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 400 421 - -
Cone19ag0400 921 Gene3D Formin, FH2 domain 452 872 IPR042201 -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 42 56 - -
Cone19ag0400 921 SUPERFAMILY Formin homology 2 domain (FH2 domain) 408 875 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 371 394 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 303 349 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 57 83 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 208 233 - -
Cone19ag0400 921 MobiDBLite consensus disorder prediction 303 421 - -
Cone19ag0400 921 ProSiteProfiles Formin homology-2 (FH2) domain profile. 458 888 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0400 K28090 - - mdm:103451653 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1403 Cone-Chr12:10298466 Cone19ag0400 Cone-Chr19:3372812 2.87E-110 dispersed
Cone19ag0400 Cone-Chr19:3372812 Cone7ag0764 Cone-Chr7:4752804 7.19E-193 dispersed
Cone13ag0382 Cone-Chr13:3487304 Cone19ag0400 Cone-Chr19:3372812 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0764 . 433 909 FH2 protein (formin) Gene Family AT3G25500 69.6 1.1e-173 608.2
Cone19ag0400 . 458 902 FH2 protein (formin) Gene Family AT3G25500 71.3 2.1e-172 604.0
Cone4ag0812 . 458 918 FH2 protein (formin) Gene Family AT3G25500 69.7 3.0e-171 600.1
Cone6ag1454 . 457 898 FH2 protein (formin) Gene Family AT3G25500 61.4 6.2e-140 496.1
Cone9ag1375 . 457 896 FH2 protein (formin) Gene Family AT3G25500 60.8 2.3e-134 477.6
Cone5ag0041 . 446 840 FH2 protein (formin) Gene Family AT3G25500 53.4 2.2e-105 381.3
Cone9ag0106 . 476 887 FH2 protein (formin) Gene Family AT3G25500 52.0 1.9e-104 378.3
Cone1ag1748 . 439 820 FH2 protein (formin) Gene Family AT3G25500 52.0 1.1e-99 362.5
Cone12ag1403 . 366 772 FH2 protein (formin) Gene Family AT3G25500 50.6 8.7e-94 342.8
Cone13ag0382 . 461 647 FH2 protein (formin) Gene Family AT3G25500 75.5 5.9e-74 276.9
Cone4ag0812 . 472 925 FH2 protein (formin) Gene Family AT2G43800 57.9 1.3e-135 481.5
Cone7ag0764 . 426 926 FH2 protein (formin) Gene Family AT2G43800 52.9 5.1e-135 479.6
Cone6ag1454 . 476 917 FH2 protein (formin) Gene Family AT2G43800 54.9 1.3e-127 454.9
Cone9ag1375 . 477 915 FH2 protein (formin) Gene Family AT2G43800 53.8 9.9e-123 438.7
Cone12ag1403 . 185 500 FH2 protein (formin) Gene Family AT4G15200 56.9 2.3e-62 237.3
Cone10ag1297 . 427 584 FH2 protein (formin) Gene Family AT4G15200 61.9 2.5e-48 190.7
Cone9ag0106 . 471 612 FH2 protein (formin) Gene Family AT4G15200 68.8 2.7e-47 187.2
Cone8ag0638 . 132 354 FH2 protein (formin) Gene Family AT1G24150 62.8 1.1e-71 268.5
Cone9ag0106 . 8 948 FH2 protein (formin) Gene Family AT5G54650 50.7 6.8e-180 628.6
Cone10ag1297 . 441 910 FH2 protein (formin) Gene Family AT5G54650 61.4 2.8e-157 553.5
Cone12ag1403 . 352 827 FH2 protein (formin) Gene Family AT5G54650 62.2 8.1e-157 552.0
Cone5ag0041 . 443 845 FH2 protein (formin) Gene Family AT5G54650 50.6 7.7e-107 386.0
Cone6ag1454 . 39 917 FH2 protein (formin) Gene Family AT5G67470 56.9 2.4e-209 726.5
Cone9ag1375 . 40 915 FH2 protein (formin) Gene Family AT5G67470 56.1 2.4e-201 699.9
Cone19ag0400 . 465 917 FH2 protein (formin) Gene Family AT5G67470 59.5 3.9e-135 479.9
Cone4ag0812 . 476 924 FH2 protein (formin) Gene Family AT5G67470 57.7 1.4e-132 471.5
Cone7ag0764 . 459 925 FH2 protein (formin) Gene Family AT5G67470 56.0 6.9e-132 469.2
Cone5ag0041 . 448 845 FH2 protein (formin) Gene Family AT5G67470 52.2 5.7e-110 396.4
Cone1ag1748 . 441 820 FH2 protein (formin) Gene Family AT5G67470 52.1 8.8e-103 372.5
Cone13ag0382 . 456 647 FH2 protein (formin) Gene Family AT5G67470 63.3 4.9e-61 233.8
Cone12ag0620 . 295 782 FH2 protein (formin) Gene Family AT1G59910 54.2 1.4e-124 444.9
Cone8ag0638 . 119 609 FH2 protein (formin) Gene Family AT1G59910 53.5 1.9e-124 444.5
Cone12ag0620 . 131 781 FH2 protein (formin) Gene Family AT1G70140 51.1 3.1e-149 526.6
Cone8ag0638 . 133 610 FH2 protein (formin) Gene Family AT1G70140 56.0 7.6e-140 495.4
Cone19ag0400 . 486 870 FH2 protein (formin) Gene Family AT5G48360 50.6 4.1e-96 350.1
Cone5ag0041 . 428 857 FH2 protein (formin) Gene Family AT3G05470 69.5 3.7e-170 596.3
Cone1ag1748 . 133 820 FH2 protein (formin) Gene Family AT3G05470 52.4 1.2e-160 564.7
Cone9ag0106 . 477 894 FH2 protein (formin) Gene Family AT3G05470 50.8 1.4e-108 391.7
Cone9ag1375 . 481 888 FH2 protein (formin) Gene Family AT3G05470 50.8 2.4e-105 380.9
Cone6ag1454 . 480 874 FH2 protein (formin) Gene Family AT3G05470 50.9 7.1e-105 379.4
Cone19ag0400 . 464 869 FH2 protein (formin) Gene Family AT3G05470 50.4 1.1e-102 372.1
Cone13ag0382 . 470 647 FH2 protein (formin) Gene Family AT3G05470 51.7 5.0e-42 170.6
Cone8ag0537 . 1 1276 FH2 protein (formin) Gene Family AT1G31810 65.0 0.0e+00 1217.6
Cone12ag0537 . 1 1308 FH2 protein (formin) Gene Family AT1G31810 63.4 0.0e+00 1157.9
Cone2ag0827 . 1245 1566 FH2 protein (formin) Gene Family AT5G07650 75.8 3.3e-130 463.4
Cone16ag0189 . 1218 1539 FH2 protein (formin) Gene Family AT5G07650 74.2 1.4e-128 458.0
Cone13ag0054 . 1068 1378 FH2 protein (formin) Gene Family AT5G07650 70.4 2.7e-119 427.2
Cone17ag0984 . 990 1311 FH2 protein (formin) Gene Family AT5G07650 65.5 3.7e-113 406.8
Cone20ag0324 . 917 1255 FH2 protein (formin) Gene Family AT5G07650 61.7 3.5e-111 400.2
Cone8ag0537 . 941 1269 FH2 protein (formin) Gene Family AT5G07650 59.3 4.9e-105 379.8
Cone2ag0575 . 915 1221 FH2 protein (formin) Gene Family AT5G07650 61.6 1.4e-104 378.3
Cone12ag0537 . 984 1298 FH2 protein (formin) Gene Family AT5G07650 56.7 8.9e-99 359.0
Cone2ag0827 . 1153 1559 FH2 protein (formin) Gene Family AT5G07770 65.9 5.9e-140 495.4
Cone16ag0189 . 1133 1532 FH2 protein (formin) Gene Family AT5G07770 65.3 3.6e-137 486.1
Cone13ag0054 . 992 1379 FH2 protein (formin) Gene Family AT5G07770 63.8 1.2e-129 461.1
Cone17ag0984 . 912 1304 FH2 protein (formin) Gene Family AT5G07770 59.6 2.8e-121 433.3
Cone20ag0324 . 856 1248 FH2 protein (formin) Gene Family AT5G07770 58.6 4.4e-119 426.0
Cone8ag0537 . 868 1266 FH2 protein (formin) Gene Family AT5G07770 55.0 1.5e-114 411.0
Cone2ag0575 . 829 1221 FH2 protein (formin) Gene Family AT5G07770 54.5 8.0e-113 405.2
Cone12ag0537 . 920 1298 FH2 protein (formin) Gene Family AT5G07770 53.5 1.0e-107 388.3
Cone17ag0984 . 906 1311 FH2 protein (formin) Gene Family AT3G32400 76.4 5.4e-171 598.2
Cone20ag0324 . 837 1255 FH2 protein (formin) Gene Family AT3G32400 74.5 3.9e-169 592.0
Cone2ag0575 . 812 1220 FH2 protein (formin) Gene Family AT3G32400 66.3 1.5e-144 510.4
Cone2ag0827 . 1162 1566 FH2 protein (formin) Gene Family AT3G32400 65.3 3.1e-142 502.7
Cone16ag0189 . 1142 1539 FH2 protein (formin) Gene Family AT3G32400 65.7 5.3e-142 501.9
Cone13ag0054 . 978 1381 FH2 protein (formin) Gene Family AT3G32400 62.1 1.1e-134 477.6
Cone8ag0537 . 877 1266 FH2 protein (formin) Gene Family AT3G32400 63.9 9.1e-134 474.6
Cone12ag0537 . 920 1298 FH2 protein (formin) Gene Family AT3G32400 61.1 1.8e-126 450.3
Cone17ag0984 . 1 1311 FH2 protein (formin) Gene Family AT2G25050 55.7 0.0e+00 1157.9
Cone20ag0324 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 57.4 0.0e+00 1129.4
Cone15ag0895 . 1 378 FH2 protein (formin) Gene Family AT2G25050 58.5 9.6e-126 449.1
Cone2ag0827 . 1170 1566 FH2 protein (formin) Gene Family AT5G07780 63.1 6.8e-123 438.3
Cone16ag0189 . 1143 1539 FH2 protein (formin) Gene Family AT5G07780 62.1 3.7e-121 432.6
Cone13ag0054 . 995 1381 FH2 protein (formin) Gene Family AT5G07780 58.6 5.4e-112 402.1
Cone17ag0984 . 915 1311 FH2 protein (formin) Gene Family AT5G07780 56.4 1.9e-109 393.7
Cone20ag0324 . 859 1255 FH2 protein (formin) Gene Family AT5G07780 54.9 1.2e-106 384.4
Cone8ag0537 . 878 1269 FH2 protein (formin) Gene Family AT5G07780 52.4 2.5e-101 366.7
Cone2ag0575 . 845 1221 FH2 protein (formin) Gene Family AT5G07780 52.9 2.3e-99 360.1
Cone16ag0189 . 1 1546 FH2 protein (formin) Gene Family AT5G07740 62.0 0.0e+00 1152.5
Cone2ag0827 . 1 1573 FH2 protein (formin) Gene Family AT5G07740 63.0 0.0e+00 1150.6
Cone15ag0895 . 1 374 FH2 protein (formin) Gene Family AT5G07740 70.9 1.4e-154 545.4
Cone15ag0886 . 1 369 FH2 protein (formin) Gene Family AT5G07740 53.2 2.1e-102 372.1
Cone2ag0827 . 1244 1575 FH2 protein (formin) Gene Family AT5G07760 74.0 1.0e-127 455.3
Cone16ag0189 . 1217 1548 FH2 protein (formin) Gene Family AT5G07760 73.4 4.9e-127 453.0
Cone13ag0054 . 1067 1381 FH2 protein (formin) Gene Family AT5G07760 69.9 4.2e-118 423.3
Cone17ag0984 . 989 1311 FH2 protein (formin) Gene Family AT5G07760 65.7 5.9e-112 402.9
Cone20ag0324 . 933 1255 FH2 protein (formin) Gene Family AT5G07760 64.8 1.4e-110 398.3
Cone2ag0575 . 914 1221 FH2 protein (formin) Gene Family AT5G07760 63.1 2.4e-105 380.9
Cone8ag0537 . 951 1269 FH2 protein (formin) Gene Family AT5G07760 60.3 6.5e-103 372.9
Cone12ag0537 . 994 1298 FH2 protein (formin) Gene Family AT5G07760 58.0 1.2e-96 352.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28