Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0426 ATGGCTACGTACTTTCATGGCAACACGGAAATCCAAGCACCCGATGGCTTGCAAACCCTCCTGCTCATGAACCCAACAGCCTACGTCCAATACTCCGACACCCCGCCACCCCCTCCGCCGCCGACATCAGCCAACCACTTCGTATTCCTCAACTCCGCCGCCAACTCTCTCTCCACCCACAACCACCTCCCCCATCACCATGCGCCAATTTCATCCCACACACAACAATTCGTTGGCATCCCACTGCCCACAAGCGCTGCTCCAAACCACCATGACTTACCAAACATAACCTCCATGCATGGTTTCATCAATCCAGCTCACCTCCAATACAATCTTTGGAACCCAAACATAAATAATGAACCATCCACGGTGGCGCGTGACTCCCCACGCTCCCAACAAGGTTTATCTCTGAGTCTTTCCTCCTCTCAACACCCTCTTCCTCCTCTGGGTTACGGCTCCATCCGCGACCAACGGAAAGGCTCATTAACACAATCGGCCCAACAAGCGATTTCAAACGATCACGATATGCGGAATATTTCGGGCGGGTCGTCCTCTTCGGCATCAGGTATAACCAACGGTGTTTCGGGTTTACAAGGCGTGCTGTTGAGTACAAAGTACTTGAAAGCGGCTCAAGACCTTCTTGACGAGGTTGTCAATGTTGGAAATGATCACAATGGGATCAAGAAGGGTAGTAATATCGGACAGCAGAGTAAGGAGGTCGGAGAGGGATCTGGCCGGGTGGCTGGAGATGGGTCTGCCGGAATGCTAGCAGACGGTAAGAACAGCTCCGAGCTTTCCACCGCTGAGCGCCAAGAAATTCAAATGAAGAAGGCAAAGCTTATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAATACCATCACCAAATGCATATCATAATATCATCATTTGAGCAAGCGGCCGGGATCGGTTCGGCGAAAACATACACGGCTCTAGCGCTCGAGACGATCTCAAGGCAATTCAGGTGCTTGAAAGACACTATTACTAGCCAAATCAAAACTGCAAACAAAACCTTAGGAGAAGAAGATAATGGTCTTAGCAATGGAGGAGGAAAGATTGAAGGGTCGAGATTGAAATATGTCGATCATCAGCTTCGTCAGCAGAGAGCTCTTCAGCAGTTGGGAATGATCCAGCATAATGCTTGGAGACCCCAAAGAGGATTACCTGAAAGATCTGTTTCGGTTCTCCGTGCTTGGCTTTTCGAACACTTTCTTCACCCATATCCAAAAGATTCAGACAAGACCATGCTTGCAAAACAAACAGGGCTTACTAGAAGCCAGGTTTCGAATTGGTTTATAAATGCAAGAGTTAGGCTATGGAAACCAATGGTGGAAGAAATGTACTTGGAAGAAATCAAGGAGCAAGAGCAGAGTAATACTAATATTGGTGGAGTAGTGAAGAGCAACAATGAAGGTTCTCCTTCAAAATCCATCACTTCACAAGGCAAAAGTACTTCTACTCCTCCAACTCATGATCATCAAAACCAACTCTCAAGCTTCAACTCCAAGCAAGAGAATCCCCCCGAAATCTTAACTCCACCGAAAAATCTTCAGAACCAATCTGGATTTTCTCTCATTGGGTCTTCGGAACTAGAAGGGATCACTCAATCGAGCCCGAAGAAGCAAAGAAACTCGGATCATGTTGAAGCTACAAATGAGCATAACATGTCAATGAAGTTCAATGAAAATCATAGACAAAGTAGTAGAGATGAGTTTTCCTTTATGGGAGGCCAAACCAACTTTATTGGAGGTTTTGGGCAATACCCAATTGGAGAGATAGACACTAGGTTCAATGGAGATGATCAATTCGCGCCCCGGTTTACGGGCAATAACGGCGTTTCGCTCACTCTTGGACTTCCTCACTGTGAAAACCTGTCATTATCCGAGGCGCACCAGGGCTTTCTCCAGAACCAAAGCATTCGGATTAATGGAACTAGAAGAGTAGTCGACAACATTGGGGAACAAGACGAGTTTAGTGCTATGAATGGTACTAATGGATCATCTGTGTCCCATTCTTCTACTGCATTTGAGAACATCAATATTCAGAACCGAAAGCGATTCGCCGCGCAATTGCTGCATGACTTTGTGGCTTGA 2118 46.88 MATYFHGNTEIQAPDGLQTLLLMNPTAYVQYSDTPPPPPPPTSANHFVFLNSAANSLSTHNHLPHHHAPISSHTQQFVGIPLPTSAAPNHHDLPNITSMHGFINPAHLQYNLWNPNINNEPSTVARDSPRSQQGLSLSLSSSQHPLPPLGYGSIRDQRKGSLTQSAQQAISNDHDMRNISGGSSSSASGITNGVSGLQGVLLSTKYLKAAQDLLDEVVNVGNDHNGIKKGSNIGQQSKEVGEGSGRVAGDGSAGMLADGKNSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHHQMHIIISSFEQAAGIGSAKTYTALALETISRQFRCLKDTITSQIKTANKTLGEEDNGLSNGGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKTMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQSNTNIGGVVKSNNEGSPSKSITSQGKSTSTPPTHDHQNQLSSFNSKQENPPEILTPPKNLQNQSGFSLIGSSELEGITQSSPKKQRNSDHVEATNEHNMSMKFNENHRQSSRDEFSFMGGQTNFIGGFGQYPIGEIDTRFNGDDQFAPRFTGNNGVSLTLGLPHCENLSLSEAHQGFLQNQSIRINGTRRVVDNIGEQDEFSAMNGTNGSSVSHSSTAFENINIQNRKRFAAQLLHDFVA 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3526526 3530915 + Conep19aG0044000.1 Cone19ag0426 458863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0426 705 FunFam BEL1-like homeodomain protein 9 393 455 - -
Cone19ag0426 705 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 143 498 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone19ag0426 705 MobiDBLite consensus disorder prediction 224 265 - -
Cone19ag0426 705 Coils Coil 270 290 - -
Cone19ag0426 705 SMART HOX_1 390 454 IPR001356 GO:0003677(InterPro)
Cone19ag0426 705 MobiDBLite consensus disorder prediction 463 567 - -
Cone19ag0426 705 SUPERFAMILY Homeodomain-like 391 456 IPR009057 -
Cone19ag0426 705 MobiDBLite consensus disorder prediction 225 239 - -
Cone19ag0426 705 ProSiteProfiles 'Homeobox' domain profile. 387 450 IPR001356 GO:0003677(InterPro)
Cone19ag0426 705 MobiDBLite consensus disorder prediction 121 147 - -
Cone19ag0426 705 SMART prehox3 195 338 IPR006563 -
Cone19ag0426 705 MobiDBLite consensus disorder prediction 157 190 - -
Cone19ag0426 705 Gene3D - 393 470 - -
Cone19ag0426 705 MobiDBLite consensus disorder prediction 550 567 - -
Cone19ag0426 705 Pfam Associated with HOX 200 337 IPR006563 -
Cone19ag0426 705 CDD homeodomain 390 451 IPR001356 GO:0003677(InterPro)
Cone19ag0426 705 MobiDBLite consensus disorder prediction 463 549 - -
Cone19ag0426 705 MobiDBLite consensus disorder prediction 121 190 - -
Cone19ag0426 705 Pfam Homeobox KN domain 407 446 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1171 Cone-Chr12:9284332 Cone19ag0426 Cone-Chr19:3526526 1.30E-96 dispersed
Cone13ag1363 Cone-Chr13:9972758 Cone19ag0426 Cone-Chr19:3526526 1.06E-64 dispersed
Cone19ag0426 Cone-Chr19:3526526 Cone8ag1218 Cone-Chr8:10314758 8.97E-89 dispersed
Cone10ag0125 Cone-Chr10:633452 Cone19ag0426 Cone-Chr19:3526526 7.06E-204 wgd
Cone13ag0468 Cone-Chr13:5121282 Cone19ag0426 Cone-Chr19:3526526 0 wgd
Cone19ag0426 Cone-Chr19:3526526 Cone3ag0138 Cone-Chr3:763964 5.51E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45297 PF01556 DnaJ_C 8.70E-32 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0426 - - - 0.0