Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0427 ATGGAAGAAATCGATATTCCTCCATTTTATCTATGCCCCATCTCCTTGGAGATCATGAAGGACCCTGTGACACTCTCGACAGGTATAACTTACGATCGAGAAAACATTGAAAAATGGTTGTATTCCGACAAGAACCAAACCTGCCCTGTCTCCAAACAACCCTTATCCGATTCAAATCTAACCCCAAACCAGACTCTCCGCCGACTAATCCGATCATGGTGCACCCTTAACGCGTCCCATGGCATCCAAGCAATCCCCTCACCAAAACCTCCAATCACCAAAACCCAAATCTCAAAACTCCTCAATGAGTACGGAAAATCATCCCCACTCTCTCAATTAACATGTCTCCAAACACTCCGTTCCGTCGCCTCGGAGAGCGAAACCAACAAACGCACCTTAGAAGCTTTGGGAACAGGCGAATTCTTAACCTCGATCATTATAACGGGATCGAGTTCCGGTCATAGTTTTGAGCTTACAAAAGCATGTCACGAGGAGGCTTTAAGTATTCTTTACAATCTTAAAATCTCTCAAGAAGGACTGAAATCTCTAATATTGATGAAAAACAATGATGGTGGTCGTCACGAGTTCATAGATTCGTTGACCAAAGTCATGCAAAGTGGAACCTACGAGTCTCGAGCTTACGCCATTATGTTCTTAAACTCTGTGTTTGAAGTATCGGATCAATTCGTTCGGTTTAGCAGTTTCGGGGTTGAATTCTTTATCGAAATAGTTAGGGTCTTAAAGGATGAAATATCCAAGGAAGCCTCTAGAGCTGCGCTACTAATGTTAATTCGACTAGGTCCATATGGACGAACCATGGCAGTTGAAGCGGGAGCTGTAACGGTATTGATAGAAATTCTTCTAGGATGTTCCGAAAAGAGGGTGAATGAGATGGTGTTGATGGCATTGGAGTTGTTAAGTGGTTGTGCGGAGGGGCGGGCAGAGATTCTAAGACATGGTGCAGGAATAGCGGTGGTAGCGAAGAAGATCCTTAGGGTTTCTCAGGCGGGGAATGAGAGCGCGGTGAGGATTTTGTGTTCGGTTGTGAAGTGTTCGGCTGGAAAGAGTGGCAGAATTCTGGAGGAAATGGTGGAATTGGAGGTGGTGAAGAAGTTGTGTTTGTTGCTTCAAGTGAATTGTGAGAGCAAGACAAGAGAGAAAGTTGTGGATGTCTTGAAGTTGTATAGTGGAGTATGGAGGAAATCTTCATGCTTGCCTTTTCATTTGCTTTCTTCGTATCCATCTTAA 1248 44.15 MEEIDIPPFYLCPISLEIMKDPVTLSTGITYDRENIEKWLYSDKNQTCPVSKQPLSDSNLTPNQTLRRLIRSWCTLNASHGIQAIPSPKPPITKTQISKLLNEYGKSSPLSQLTCLQTLRSVASESETNKRTLEALGTGEFLTSIIITGSSSGHSFELTKACHEEALSILYNLKISQEGLKSLILMKNNDGGRHEFIDSLTKVMQSGTYESRAYAIMFLNSVFEVSDQFVRFSSFGVEFFIEIVRVLKDEISKEASRAALLMLIRLGPYGRTMAVEAGAVTVLIEILLGCSEKRVNEMVLMALELLSGCAEGRAEILRHGAGIAVVAKKILRVSQAGNESAVRILCSVVKCSAGKSGRILEEMVELEVVKKLCLLLQVNCESKTREKVVDVLKLYSGVWRKSSCLPFHLLSSYPS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3532185 3533982 + Conep19aG0044100.1 Cone19ag0427 458864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0427 415 PANTHER WDSAM1 PROTEIN 3 412 IPR045185 GO:0061630(InterPro)
Cone19ag0427 415 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0427 415 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Cone19ag0427 415 CDD RING-Ubox_PUB 7 60 IPR045210 -
Cone19ag0427 415 SMART Ubox_2 9 73 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0427 415 Pfam U-box domain 6 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag0427 415 Gene3D - 95 402 IPR011989 -
Cone19ag0427 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Cone19ag0427 415 SUPERFAMILY RING/U-box 3 78 - -
Cone19ag0427 415 SUPERFAMILY ARM repeat 100 389 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0170 Cone-Chr18:886262 Cone19ag0427 Cone-Chr19:3532185 2.81E-133 dispersed
Cone19ag0427 Cone-Chr19:3532185 Cone5ag1318 Cone-Chr5:7677052 1.18E-67 dispersed
Cone10ag0123 Cone-Chr10:628654 Cone19ag0427 Cone-Chr19:3532185 1.11E-163 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone19ag0427 Cone-Chr19:3532185 1.22E-134 wgd
Cone13ag0469 Cone-Chr13:5129164 Cone19ag0427 Cone-Chr19:3532185 3.22E-258 wgd
Cone19ag0427 Cone-Chr19:3532185 Cone3ag0136 Cone-Chr3:756341 2.58E-157 wgd
Cone19ag0427 Cone-Chr19:3532185 Cone5ag1317 Cone-Chr5:7662685 1.82E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0427 - - - 0.0