Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0435 ATGCACAACTCCACTAATCCTAATGCATACAACAATGGCTTATTAGGCTCAAACAACATAGGCGGTTTTGGTTACGGCATCGGAGTTTCAGCCGGAATTCTCATCCTCATAACCACCATTTTACTCGCTTCTTATTTCTGCACCCGGCCTGGATTGCCTTCATCAGCACCGCCACTAAGCACCAGGAACCAAGCAACCGCTCATGATCAGCCAGTAGCAGATCACCACATGTTGGTGCTTGATATAGGACTTGATGACGCCACCATCTCAAGCCATCCCAAGTTTCTATTCTCTGAGCTTGATAATTACAAGCATCTTACTGCTAATGAAAATTGTTGTTCTATATGTTTAGGTGAGTACAAGAACAGTCATATGGTTCGCGTTTTACCTGATTGTGACCATATGTTTCATGTCAAATGTATCGACCCTTGGTTGAAGATGAATCCGACATGTCCTCTCTGCAGAACTTCTCCTATTCCGACACCACTTTCCACTCCTTTGGCAGAAGTTGTTCCCTTGGCAAGTAGAAGAGATTGA 537 44.13 MHNSTNPNAYNNGLLGSNNIGGFGYGIGVSAGILILITTILLASYFCTRPGLPSSAPPLSTRNQATAHDQPVADHHMLVLDIGLDDATISSHPKFLFSELDNYKHLTANENCCSICLGEYKNSHMVRVLPDCDHMFHVKCIDPWLKMNPTCPLCRTSPIPTPLSTPLAEVVPLASRRD 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3602114 3602650 + Conep19aG0044900.1 Cone19ag0435 458872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0435 178 SUPERFAMILY RING/U-box 89 160 - -
Cone19ag0435 178 CDD RING-H2_EL5-like 112 155 - -
Cone19ag0435 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 159 IPR013083 -
Cone19ag0435 178 Pfam Ring finger domain 112 155 IPR001841 -
Cone19ag0435 178 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cone19ag0435 178 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 173 IPR045899 -
Cone19ag0435 178 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0430 Cone-Chr15:2017336 Cone19ag0435 Cone-Chr19:3602114 1.34E-30 dispersed
Cone18ag1055 Cone-Chr18:7766454 Cone19ag0435 Cone-Chr19:3602114 1.99E-38 dispersed
Cone19ag0435 Cone-Chr19:3602114 Cone5ag0409 Cone-Chr5:1743634 1.49E-27 dispersed
Cone13ag0480 Cone-Chr13:5226450 Cone19ag0435 Cone-Chr19:3602114 1.50E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0435 - - - 0.0