Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0472 ATGCCTCCCAGAGAAGATTCTTTCAAACCAGTTGCTGACTCAAACCCATCTGTTCCGATCCGTGACATGACAAGAACGAAACCTGAAACGGATTCCACTCTCACATCAACCTCATTACAACGACTAAAAGCAAGCGTCCACAAGCTGCTCAAATGCCCCATTTGCACAACGTTGACGTACCCTATCCACCAGATACAAAAACCACAGCAGCCACGTTATTTCCCCATACTGCGCAAGCCCTATCGCGAGCTAAAATGTCGATTCCGTCCCTATAACTGCCCTTATGCCAGATTCAATTGCTCTATCACGGGCGATATCCATGCCTTAATGCAACATCTCAAGGATAATCCCCAGGTTGCCATGCATTACGGTTCTTCTTTTAACCACCGTTACATTCAATCATTTCCGTTTGAAGTTGAAAATGCTGTTTGGATGTTGACCGTCTTCAACTGTTTCGGAAGGCAGTTTTGCTTGCACTTTGAGGCTTTTCGGTTGGGTTCTGCTCTGGTTTACATGGCTTTTGTACGGTTCATGGGAGACAACGAGGAGGCTAAGAAATTCATTTACAGTTTGGAAGTTGGTGGTAATGGTCGTAAGTTGATATCGCATGGAGTTCTGAGGAGCATCCGTGATAGTCGTAGGAAGGTCCGTGACAGTCAAGATGGTCTTATCATCCATAGGAATCTGGTTCTTTATTTTTCGGGTGGGGATCAGAAAGAGCTAACGTTACCAGTTACTGGGCGAATATGGAAAGAAGAAAAACGGATAGAGAACGGCCACCTCATAAAGGCGATTAGAAATTTTTTTCAGTGTCCTGAGATTTAA 825 44.61 MPPREDSFKPVADSNPSVPIRDMTRTKPETDSTLTSTSLQRLKASVHKLLKCPICTTLTYPIHQIQKPQQPRYFPILRKPYRELKCRFRPYNCPYARFNCSITGDIHALMQHLKDNPQVAMHYGSSFNHRYIQSFPFEVENAVWMLTVFNCFGRQFCLHFEAFRLGSALVYMAFVRFMGDNEEAKKFIYSLEVGGNGRKLISHGVLRSIRDSRRKVRDSQDGLIIHRNLVLYFSGGDQKELTLPVTGRIWKEEKRIENGHLIKAIRNFFQCPEI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3865754 3866809 - Conep19aG0048900.1 Cone19ag0472 458909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0472 274 MobiDBLite consensus disorder prediction 1 36 - -
Cone19ag0472 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 110 IPR013083 -
Cone19ag0472 274 FunFam E3 ubiquitin-protein ligase SINAT5-like 114 246 - -
Cone19ag0472 274 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 73 248 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone19ag0472 274 SUPERFAMILY TRAF domain-like 83 250 - -
Cone19ag0472 274 Pfam Sina, zinc finger 54 129 - -
Cone19ag0472 274 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 111 246 IPR008974 GO:0005515(InterPro)
Cone19ag0472 274 Pfam Sina, TRAF-like domain 149 246 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0472 Cone-Chr19:3865754 Cone1ag0982 Cone-Chr1:54923415 1.25E-84 dispersed
Cone13ag0520 Cone-Chr13:5506266 Cone19ag0472 Cone-Chr19:3865754 3.98E-131 wgd
Cone19ag0472 Cone-Chr19:3865754 Cone3ag0097 Cone-Chr3:554710 8.78E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0472 K04506 - vvi:100233085 288.885